Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024615.1 Corchorus olitorius cultivar O-4 contig24648, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3016
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.31


Found at i:1217 original size:21 final size:21

Alignment explanation


    Indices: 1193--1237  Score: 63
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       1183 GGCGCCCACA

                         *     * 
       1193 TGGTTGTCTTGAGCACCCATG
          1 TGGTTGTCTTGAGAACCCAGG

                 *               
       1214 TGGTTTTCTTGAGAACCCAGG
          1 TGGTTGTCTTGAGAACCCAGG

               
       1235 TGG
          1 TGG

       1238 GCAGTGTCAC


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.16, C:0.20, G:0.31, T:0.33


Consensus pattern (21 bp):   
TGGTTGTCTTGAGAACCCAGG

Found at i:1866 original size:21 final size:21

Alignment explanation


    Indices: 1840--1880  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1830 ACAAGGGCAA

                                 
       1840 GATCCATTGAAGATGCCATTT
          1 GATCCATTGAAGATGCCATTT

                                
       1861 GATCCATTGAAGATGCCATT
          1 GATCCATTGAAGATGCCATT

       1881 AGGCCCAATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.29, C:0.20, G:0.20, T:0.32


Consensus pattern (21 bp):   
GATCCATTGAAGATGCCATTT
Done.