Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024616.1 Corchorus olitorius cultivar O-4 contig24649, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3464
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:1522 original size:21 final size:21

Alignment explanation


    Indices: 1496--1536  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1486 TTGAAGCCCT

                                  
       1496 ATTGGATAC-AAGTGGTACTAA
          1 ATTGGAT-CTAAGTGGTACTAA

                                
       1517 ATTGGATCTAAGTGGTACTA
          1 ATTGGATCTAAGTGGTACTA

       1537 GGGTTTCTAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    1  0.05
  21   18  0.95

ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32


Consensus pattern (21 bp):   
ATTGGATCTAAGTGGTACTAA
Done.