Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024617.1 Corchorus olitorius cultivar O-4 contig24650, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6077
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:251 original size:11 final size:11

Alignment explanation


    Indices: 235--260  Score: 52
    Period size: 11  Copynumber: 2.4  Consensus size: 11

        225 AGATAATTTC

                       
        235 TTTTCTTCTAG
          1 TTTTCTTCTAG

                       
        246 TTTTCTTCTAG
          1 TTTTCTTCTAG

                
        257 TTTT
          1 TTTT

        261 TAGGCAAAGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   15  1.00

ACGTcount: A:0.08, C:0.15, G:0.08, T:0.69


Consensus pattern (11 bp):   
TTTTCTTCTAG

Found at i:1049 original size:15 final size:15

Alignment explanation


    Indices: 1019--1060  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1009 TTACTTTGCT

                            
       1019 TTGTTTTCTAGTTTAA
          1 TTGTTTTCT-GTTTAA

                           
       1035 TTGTTTTCTGTTTAA
          1 TTGTTTTCTGTTTAA

               *       
       1050 TTGCTTTCTGT
          1 TTGTTTTCTGT

       1061 CAATCTCTGT


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.12, C:0.10, G:0.14, T:0.64


Consensus pattern (15 bp):   
TTGTTTTCTGTTTAA
Done.