genome.fa.s24618.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024618.1 Corchorus olitorius cultivar O-4 contig24651, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43422

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118--143	11	2.4	11	100	0	52	7	15	7	69	1.35
902--943	15	2.7	15	92	3	66	11	9	14	64	1.50
4496--4537	21	2.0	21	90	0	66	19	38	23	19	1.93
4437--4608	71	2.4	71	90	2	256	29	26	25	19	1.98
4566--4608	22	2.0	22	90	0	68	23	32	23	20	1.98
6720--6857	33	4.2	33	81	5	129	27	7	21	43	1.80
8894--9084	71	2.7	71	88	1	285	31	27	23	17	1.97
8976--9015	21	1.9	21	100	0	80	22	35	20	22	1.96
9045--9087	22	2.0	22	90	0	68	23	32	23	20	1.98
14469--14517	21	2.4	21	81	18	59	2	20	2	75	1.00
22023--22058	2	18.0	2	100	0	72	50	0	50	0	1.00
22332--22398	30	2.2	29	100	0	116	11	5	61	20	1.51
22337--22425	30	3.6	24	80	16	85	13	6	60	19	1.55
22337--22470	51	2.6	51	83	3	151	14	6	58	20	1.58
22442--22488	21	2.2	21	92	0	76	21	4	55	19	1.60
22484--22563	21	3.6	21	71	6	61	22	7	56	13	1.62
22463--22543	42	1.9	42	82	5	101	24	6	54	14	1.63
22522--22606	24	3.5	24	80	3	80	20	5	56	17	1.61
22560--22654	24	3.8	24	66	8	64	21	6	49	23	1.72
22572--22690	51	2.3	51	94	0	211	23	8	47	21	1.78
22598--22719	30	4.4	29	76	17	134	26	9	44	19	1.82
22959--23006	20	2.3	21	85	3	62	25	6	52	16	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23096--23166	21	3.4	21	76	7	72	21	4	57	16	1.56
22839--23171	173	1.9	171	93	2	569	20	10	44	24	1.82
23092--23171	21	3.8	20	72	9	61	21	5	56	17	1.60
28561--28596	14	2.6	14	91	8	56	61	0	0	38	0.96
30708--30732	12	2.1	12	100	0	50	60	16	8	16	1.58
37898--37940	14	3.1	14	100	0	86	48	6	6	37	1.57
41189--41258	32	2.2	32	94	0	122	57	7	1	34	1.35

Tables:   1

The End!