Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024619.1 Corchorus olitorius cultivar O-4 contig24652, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28910

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
466--509
23
1.9
23
85
0
61
11
18
0
70
1.16
1583--2238
344
1.9
337
84
9
822
39
12
9
39
1.75
9262--9303
20
2.1
20
86
8
59
33
21
26
19
1.97
15714--15753
12
3.2
12
89
7
53
67
0
17
15
1.23
16686--16711
4
6.5
4
100
0
52
0
23
0
76
0.78
18787--18832
22
2.0
24
83
8
60
41
6
15
36
1.73
18919--19114
108
1.8
109
79
3
234
33
13
16
36
1.89
18949--19120
34
4.8
35
83
8
204
30
13
17
38
1.89
18979--19158
74
2.4
75
77
12
192
28
13
17
40
1.88
18949--19178
108
2.1
107
79
6
241
30
13
17
38
1.89
23836--23866
14
2.2
14
94
0
53
48
9
12
29
1.73
24172--24215
7
6.6
7
84
10
56
63
0
15
20
1.31
24177--24214
13
2.9
13
81
14
51
57
0
18
23
1.40
25605--25951
143
2.4
142
87
2
482
16
22
23
37
1.93
25585--25919
179
1.9
179
92
1
564
16
22
23
38
1.93
25656--26165
107
4.7
108
76
8
407
16
19
25
38
1.92
25570--26161
179
3.3
178
80
4
523
16
20
25
37
1.93
25526--26165
35
17.9
35
76
6
374
16
20
25
37
1.93
25859--26080
36
6.2
36
75
5
137
15
16
31
36
1.90
25991--26124
75
1.9
68
80
14
155
15
14
30
38
1.88
26097--26166
36
2.0
35
88
2
104
21
20
21
37
1.95
27248--27287
12
3.2
12
89
7
53
67
0
17
15
1.23

Tables:   1

The End!