genome.fa.s24621.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024621.1 Corchorus olitorius cultivar O-4 contig24654, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135215

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--210	60	3.5	59	84	8	266	31	14	13	40	1.84
126--288	79	2.1	78	87	7	233	29	14	12	44	1.81
66--349	138	2.1	138	89	4	439	29	13	13	43	1.82
205--465	59	4.4	59	88	4	377	29	13	14	41	1.85
205--700	118	4.0	119	70	14	421	29	13	15	41	1.85
443--484	19	2.3	19	91	4	68	28	11	7	52	1.64
323--604	137	2.1	137	91	2	451	29	13	14	42	1.83
382--543	78	2.1	78	88	6	240	29	14	12	43	1.82
264--661	196	2.0	196	88	4	590	30	13	14	41	1.84
460--704	59	4.1	59	88	1	375	29	13	15	41	1.85
1--1179	255	4.6	255	89	6	1641	27	14	16	41	1.87
611--797	94	2.0	92	91	4	304	28	13	16	40	1.87
493--910	211	2.0	210	91	2	687	28	14	16	40	1.87
705--1182	117	4.1	118	88	3	716	25	14	18	41	1.88
705--1182	59	8.2	59	88	3	716	25	14	18	41	1.88
1419--1492	29	2.7	27	84	10	96	17	13	22	45	1.83
6905--7025	53	2.3	52	83	9	140	35	9	25	29	1.87
7532--7634	54	1.9	54	100	0	206	44	17	17	20	1.87
8759--8992	118	2.0	117	92	0	387	46	8	9	34	1.68
11074--11149	2	39.5	2	74	12	61	48	0	5	46	1.24
11058--11100	17	2.6	16	82	10	50	39	0	6	53	1.28
11720--11762	1	43.0	1	95	0	77	97	2	0	0	0.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32502--32550	22	2.2	22	88	0	71	18	16	24	40	1.90
33252--33418	37	4.7	35	87	5	237	35	17	16	30	1.92
33255--33418	72	2.3	71	91	3	267	35	17	16	30	1.92
35432--35463	2	16.0	2	100	0	64	50	0	0	50	1.00
41820--41854	18	1.9	18	94	0	61	65	0	22	11	1.24
51902--51937	18	1.9	18	88	5	54	63	8	16	11	1.49
52537--52572	19	1.9	18	88	5	54	27	22	8	41	1.82
58764--58788	2	12.5	2	100	0	50	52	0	0	48	1.00
65583--65618	18	2.0	18	88	0	54	72	0	27	0	0.85
66759--66798	12	3.3	12	83	13	55	5	27	32	35	1.79
66755--66805	24	2.1	24	85	0	66	5	31	29	33	1.81
69793--69836	16	2.8	16	82	0	61	40	43	11	4	1.61
71861--71907	13	3.8	12	78	13	51	40	0	4	55	1.19
72050--72111	16	3.8	16	81	10	81	40	41	12	4	1.65
72530--72573	22	2.0	22	95	4	81	36	13	0	50	1.42
76785--76819	17	2.1	17	88	0	52	40	11	5	42	1.65
82445--82570	22	5.7	22	70	9	71	38	11	12	38	1.79
84376--84510	43	3.0	42	82	12	171	45	5	12	37	1.65
84782--84832	27	1.9	26	88	11	77	43	1	0	54	1.11
84782--84836	26	2.2	25	83	9	67	45	1	0	52	1.11
86730--86758	2	14.5	2	100	0	58	0	0	51	48	1.00
91319--91376	30	1.9	30	86	6	82	43	6	17	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95304--95408	41	2.5	40	79	8	106	48	15	12	23	1.79
98555--98581	11	2.5	11	100	0	54	18	14	11	55	1.68
102726--102778	24	2.2	24	93	0	88	35	7	41	15	1.75
106510--106575	30	2.2	30	97	2	125	16	25	50	7	1.72
106547--106600	21	2.6	21	81	0	63	12	27	50	9	1.71
110701--110728	12	2.3	12	100	0	56	71	7	14	7	1.29
113303--113351	25	2.0	25	95	0	89	38	22	12	26	1.89
113590--113665	27	2.7	27	87	4	107	40	28	14	15	1.87
116438--116722	142	2.0	143	91	2	466	27	19	21	31	1.97
116792--117075	72	3.9	72	96	0	507	25	19	19	35	1.95
117241--117543	147	2.1	147	90	1	473	21	24	27	26	1.99
119631--119668	15	2.5	15	100	0	76	15	26	5	52	1.64
120482--120543	11	5.6	11	73	7	63	41	3	0	54	1.16
120486--120552	22	3.0	22	91	2	107	44	5	0	49	1.27
120730--122414	622	2.7	622	94	2	2903	32	17	17	31	1.94
125805--125848	22	2.0	22	95	0	79	31	11	18	38	1.86
131025--131118	29	3.2	29	67	16	84	38	17	10	34	1.84
131024--131149	60	2.1	58	91	4	207	37	17	9	35	1.82
131684--131737	19	2.6	21	77	19	60	38	3	18	38	1.69

Tables:   1

The End!