Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024624.1 Corchorus olitorius cultivar O-4 contig24657, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30271

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6009--6035
11
2.5
11
100
0
54
14
0
0
85
0.61
6936--6977
18
2.3
18
80
8
50
71
7
14
7
1.29
10863--10960
32
3.1
32
77
0
115
55
12
11
21
1.68
12073--12178
52
2.0
52
98
0
203
40
15
19
24
1.90
14943--14995
25
2.1
25
96
0
97
24
28
22
24
2.00
15074--15149
31
2.5
31
93
4
127
28
19
11
39
1.87
16693--16797
34
3.1
34
66
15
101
44
10
20
23
1.83
16693--16818
66
1.9
66
100
0
252
43
10
21
24
1.83
25789--25850
31
2.0
30
81
9
72
38
8
17
35
1.80
26332--26483
3
50.3
3
98
1
295
66
0
0
32
0.97
26460--27075
203
2.9
212
82
7
749
30
17
17
35
1.93
27191--27228
20
1.9
20
94
0
67
52
18
0
28
1.45
27492--27543
21
2.4
22
93
6
97
30
15
5
48
1.68
28120--28197
28
2.5
31
78
16
90
21
7
7
62
1.47
28139--28196
28
2.1
28
93
0
98
22
6
6
63
1.43
28418--28486
28
2.6
27
84
11
90
28
8
5
56
1.53
29282--29340
16
3.8
16
78
10
59
5
20
37
37
1.75
29492--29544
13
4.3
13
79
9
58
54
0
0
45
0.99

Tables:   1

The End!