Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024633.1 Corchorus olitorius cultivar O-4 contig24666, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28648

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62--107
22
2.0
22
87
4
65
15
43
28
13
1.83
13951--14019
29
2.3
29
80
11
70
24
4
20
50
1.66
19633--19694
8
6.9
9
82
17
67
50
0
22
27
1.50
19631--19694
18
3.6
18
80
19
80
50
0
21
28
1.49
19660--19700
5
8.6
5
80
20
52
56
0
19
24
1.42
19638--19694
28
2.0
28
86
6
80
50
0
21
28
1.48
22350--22380
13
2.4
13
100
0
62
38
0
32
29
1.57
24380--24421
21
2.0
22
85
4
59
28
33
21
16
1.95
25708--25757
26
2.0
26
84
4
66
16
6
10
68
1.38
26022--26055
11
3.2
11
83
8
52
8
5
2
82
0.93
26012--26055
21
2.1
21
87
8
63
11
6
2
79
1.01
28196--28237
15
2.7
15
92
3
66
11
9
14
64
1.50

Tables:   1

The End!