Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01002464.1 Corchorus olitorius cultivar O-4 contig02464, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1043
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27


Found at i:682 original size:19 final size:19

Alignment explanation


    Indices: 658--698  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        648 TTAGTATGAT

                               
        658 TATATCTTCATTCATACTA
          1 TATATCTTCATTCATACTA

                               
        677 TATATCTTCATTCATACTA
          1 TATATCTTCATTCATACTA

               
        696 TAT
          1 TAT

        699 GAGGTGAGTT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.32, C:0.20, G:0.00, T:0.49


Consensus pattern (19 bp):   
TATATCTTCATTCATACTA

Done.