Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024641.1 Corchorus olitorius cultivar O-4 contig24674, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62047

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
495--563
19
3.7
19
76
1
68
23
1
2
72
1.06
1202--1247
20
2.3
20
92
0
74
30
19
30
19
1.97
3252--3276
9
2.8
9
100
0
50
28
0
24
48
1.52
6052--6095
19
2.4
18
84
3
52
52
2
0
45
1.13
7293--7365
22
3.2
25
62
22
68
41
10
10
36
1.76
7282--7365
44
1.9
44
97
0
159
40
11
9
38
1.75
7350--7378
13
2.2
13
100
0
58
44
6
10
37
1.65
7520--7598
40
2.0
40
92
0
131
18
15
25
40
1.90
9353--9384
16
2.0
16
100
0
64
31
25
6
37
1.81
9481--9604
61
2.0
61
98
0
239
29
16
8
45
1.77
9508--9598
28
3.1
28
62
20
67
28
18
7
45
1.77
16374--16437
32
2.0
32
100
0
128
50
15
9
25
1.74
20872--21276
203
2.0
208
90
3
642
35
19
17
28
1.94
41815--41961
72
2.1
71
88
1
213
47
18
8
25
1.77
42106--42148
8
5.4
8
91
8
70
88
0
11
0
0.52
42105--42151
9
5.2
9
82
17
62
87
0
12
0
0.55
42106--42153
15
3.1
15
90
6
69
85
0
14
0
0.60
48713--48751
17
2.5
15
81
18
53
38
10
2
48
1.51
48600--49030
233
1.8
235
87
7
642
34
18
11
35
1.87

Tables:   1

The End!