Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024643.1 Corchorus olitorius cultivar O-4 contig24676, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5089
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33


Found at i:1242 original size:63 final size:63

Alignment explanation


    Indices: 1143--1274  Score: 237
    Period size: 63  Copynumber: 2.1  Consensus size: 63

       1133 TATTTTCTAC

                                                                           
       1143 TTCAATTTAATCCTTTCCTTTCTATTTCAATAAACTTCCACTAAAAATCAATAATAATTATAA
          1 TTCAATTTAATCCTTTCCTTTCTATTTCAATAAACTTCCACTAAAAATCAATAATAATTATAA

                     *                     *                             * 
       1206 TTCAATTTAGTCCTTTCCTTTCTATTTCAATCAACTTCCACTAAAAATCAATAATAATTATGA
          1 TTCAATTTAATCCTTTCCTTTCTATTTCAATAAACTTCCACTAAAAATCAATAATAATTATAA

                  
       1269 TTCAAT
          1 TTCAAT

       1275 AGATTCTTTA


Statistics
Matches: 66,  Mismatches: 3, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  63   66  1.00

ACGTcount: A:0.37, C:0.20, G:0.02, T:0.42


Consensus pattern (63 bp):   
TTCAATTTAATCCTTTCCTTTCTATTTCAATAAACTTCCACTAAAAATCAATAATAATTATAA
Done.