Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024644.1 Corchorus olitorius cultivar O-4 contig24677, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19545
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31


Found at i:9187 original size:63 final size:63

Alignment explanation


    Indices: 9088--9219  Score: 246
    Period size: 63  Copynumber: 2.1  Consensus size: 63

       9078 TATTTTCTAC

                                                             *             
       9088 TTCAATTTAATCCTTTCCTTTCTATTTCAATAAACTTCCACTAAAAATCGATAATAATTATAA
          1 TTCAATTTAATCCTTTCCTTTCTATTTCAATAAACTTCCACTAAAAATCAATAATAATTATAA

                                           *                               
       9151 TTCAATTTAATCCTTTCCTTTCTATTTCAATCAACTTCCACTAAAAATCAATAATAATTATAA
          1 TTCAATTTAATCCTTTCCTTTCTATTTCAATAAACTTCCACTAAAAATCAATAATAATTATAA

                  
       9214 TTCAAT
          1 TTCAAT

       9220 AGATTCTTTA


Statistics
Matches: 67,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  63   67  1.00

ACGTcount: A:0.38, C:0.20, G:0.01, T:0.42


Consensus pattern (63 bp):   
TTCAATTTAATCCTTTCCTTTCTATTTCAATAAACTTCCACTAAAAATCAATAATAATTATAA

Found at i:10437 original size:21 final size:21

Alignment explanation


    Indices: 10411--10453  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

      10401 GAAGATTGGT

                                 
      10411 AATGGAAAATATCTACAAGCA
          1 AATGGAAAATATCTACAAGCA

                                 
      10432 AATGGAAAATATCTACAAGCA
          1 AATGGAAAATATCTACAAGCA

             
      10453 A
          1 A

      10454 CTAGTAAAGG


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.53, C:0.14, G:0.14, T:0.19


Consensus pattern (21 bp):   
AATGGAAAATATCTACAAGCA
Done.