Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024647.1 Corchorus olitorius cultivar O-4 contig24680, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26448

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1556--1663
31
3.5
30
80
8
112
14
21
19
44
1.86
3139--3191
27
2.0
27
92
0
88
45
5
3
45
1.45
3645--3725
22
3.5
22
80
17
85
33
9
14
41
1.79
3659--3857
22
9.4
22
73
12
116
34
9
17
38
1.82
3687--3802
59
2.0
60
83
8
148
37
10
14
37
1.81
3921--4000
22
3.5
24
73
14
71
37
6
12
43
1.68
3967--4656
22
31.7
22
65
15
174
37
9
16
36
1.82
4464--4657
85
2.3
86
78
10
200
36
9
18
35
1.84
4736--4835
22
4.5
22
71
5
76
38
6
18
38
1.75
5838--5870
2
17.0
2
87
6
50
48
0
3
48
1.17
6280--6306
13
2.1
13
100
0
54
48
37
7
7
1.59
8168--8209
18
2.3
19
80
16
52
40
21
0
38
1.53
8127--8279
77
2.0
77
92
0
252
46
11
3
38
1.57
7898--8472
280
2.1
277
96
1
1071
42
14
8
34
1.77
8796--9063
107
2.5
106
89
2
403
42
7
8
41
1.63
19896--19938
16
2.7
15
82
10
50
0
16
13
69
1.19
23680--23715
3
12.0
3
100
0
72
33
0
0
66
0.92
25710--25869
22
7.3
22
70
15
98
40
15
8
36
1.76

Tables:   1

The End!