Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024648.1 Corchorus olitorius cultivar O-4 contig24681, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15813
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:735 original size:27 final size:26
Alignment explanation
Indices: 680--741 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
670 TCTAAATTTT
680 TATTATTTTAATAATGGAATAATTAAAA
1 TATTA-TTTAATAATGGAAT-ATTAAAA
708 TATTATTTAATAATGGTAAT-TTAGAAA
1 TATTATTTAATAATGG-AATATTA-AAA
735 TA-TATTT
1 TATTATTT
742 GAAAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
26 8 0.25
27 16 0.50
28 8 0.25
ACGTcount: A:0.45, C:0.00, G:0.08, T:0.47
Consensus pattern (26 bp):
TATTATTTAATAATGGAATATTAAAA
Found at i:1771 original size:178 final size:178
Alignment explanation
Indices: 1456--1781 Score: 469
Period size: 178 Copynumber: 1.8 Consensus size: 178
1446 AAATTATGTA
* * **
1456 ATATTAAGTAAACCGTCTATTTCCGTTAACCAAAAGAATTAATTCTTTGGAAGCAATTTTTATAC
1 ATATTAAGTAAACCGTCTATTCCCGTTAACCAAAACAACAAATTCTTTGGAAGCAATTTTTATAC
*
1521 CTTGAATATTAAATTTAGTTTTCGAGTCCTTCATGAAAGTTGCAGATCTTGAAACAACCTTTCAA
66 CTTGAACATTAAATTTAGTTTTCGAGTCCTTCATGAAAGTTGCAGATCTTGAAACAACCTTTCAA
*
1586 GAGACACTTGAATCATCTCAATCAGACATCTGGAGCAAAAGTTATATG
131 GAGACACTTAAATCATCTCAATCAGACATCTGGAGCAAAAGTTATATG
** *
1634 ATATTAAGTGGACCGTCTATTCCCGTTAACCGAAACAACAAATT-TTTCGGAAGC-ATTTTTGAT
1 ATATTAAGTAAACCGTCTATTCCCGTTAACCAAAACAACAAATTCTTT-GGAAGCAATTTTT-AT
* * * *
1697 A-CTTGAAACATTAAATTTAGTTTTCGAGTTCTTCATGAAAGTTGTAGATCTTGGAACAATCTTT
64 ACCTTG-AACATTAAATTTAGTTTTCGAGTCCTTCATGAAAGTTGCAGATCTTGAAACAACCTTT
* *
1761 TAATAGACACTTAAATCATCT
128 CAAGAGACACTTAAATCATCT
1782 TAATTGGATA
Statistics
Matches: 130, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
177 13 0.10
178 117 0.90
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35
Consensus pattern (178 bp):
ATATTAAGTAAACCGTCTATTCCCGTTAACCAAAACAACAAATTCTTTGGAAGCAATTTTTATAC
CTTGAACATTAAATTTAGTTTTCGAGTCCTTCATGAAAGTTGCAGATCTTGAAACAACCTTTCAA
GAGACACTTAAATCATCTCAATCAGACATCTGGAGCAAAAGTTATATG
Found at i:4126 original size:19 final size:20
Alignment explanation
Indices: 4104--4141 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
4094 ACTATTATTT
4104 TTTTAATTT-AATATTTTAC
1 TTTTAATTTCAATATTTTAC
* *
4123 TTTTGATTTCAATTTTTTA
1 TTTTAATTTCAATATTTTA
4142 AATGTCAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (20 bp):
TTTTAATTTCAATATTTTAC
Found at i:4410 original size:66 final size:68
Alignment explanation
Indices: 4304--4521 Score: 252
Period size: 66 Copynumber: 3.3 Consensus size: 68
4294 TCTTGTCTCT
* * **
4304 GTGTGGTTATCAAAATTTCATAA-GATGGTTATTGTAATTTCATGAGG-AGGTTATCAAAATTCC
1 GTGTGGTTACCAAAATTTCATAAGGATAGTTATTAAAATTTCATGAGGAAGGTTATCAAAATTCC
4367 ATA
66 ATA
*
4370 GTGTGGTTACCAAAATTTCATAAGGA-AGTTATCAAAATTTCATG-GGAAGGTTATCAAAA-TCT
1 GTGTGGTTACCAAAATTTCATAAGGATAGTTATTAAAATTTCATGAGGAAGGTTATCAAAATTC-
4432 CATA
65 CATA
* **
4436 GTGTGGTTACCAAAATTTCAT-AGGATCATGTTATTAAAATTTC-TTAGGAAGGTTATTGAAATT
1 GTGTGGTTACCAAAATTTCATAAGGAT-A-GTTATTAAAATTTCATGAGGAAGGTTATCAAAATT
**
4499 TTATA
64 CCATA
* *
4504 GTGTGGTTATCACAATTT
1 GTGTGGTTACCAAAATTT
4522 TATAGAAAGG
Statistics
Matches: 131, Mismatches: 13, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
65 8 0.06
66 73 0.56
67 4 0.03
68 45 0.34
69 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.38
Consensus pattern (68 bp):
GTGTGGTTACCAAAATTTCATAAGGATAGTTATTAAAATTTCATGAGGAAGGTTATCAAAATTCC
ATA
Found at i:4458 original size:22 final size:21
Alignment explanation
Indices: 4306--4526 Score: 145
Period size: 22 Copynumber: 10.0 Consensus size: 21
4296 TTGTCTCTGT
4306 GTGGTTATCAAAATTTCATAAG
1 GTGGTTATCAAAATTTCAT-AG
* ***
4328 ATGGTTATTGTAATTTCATGAG
1 GTGGTTATCAAAATTTCAT-AG
* *
4350 GAGGTTATCAAAATTCCATAG
1 GTGGTTATCAAAATTTCATAG
*
4371 TGTGGTTACCAAAATTTCATAAG
1 -GTGGTTATCAAAATTTCAT-AG
** *
4394 GAAGTTATCAAAATTTCATGG
1 GTGGTTATCAAAATTTCATAG
* *
4415 GAAGGTTATCAAAATCTCATAG
1 G-TGGTTATCAAAATTTCATAG
*
4437 TGTGGTTACCAAAATTTCATAG
1 -GTGGTTATCAAAATTTCATAG
* * *
4459 GATCATGTTATTAAAATTTCTTAG
1 G-T--GGTTATCAAAATTTCATAG
* ** *
4483 GAAGGTTATTGAAATTTTATAG
1 G-TGGTTATCAAAATTTCATAG
* *
4505 TGTGGTTATCACAATTTTATAG
1 -GTGGTTATCAAAATTTCATAG
4527 AAAGGTTATA
Statistics
Matches: 154, Mismatches: 37, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
21 5 0.03
22 128 0.83
23 4 0.03
24 17 0.11
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
GTGGTTATCAAAATTTCATAG
Found at i:4598 original size:22 final size:22
Alignment explanation
Indices: 4544--4691 Score: 113
Period size: 22 Copynumber: 6.7 Consensus size: 22
4534 ATAAAAAAGA
* * *
4544 TTATCAAAATATCATAGCGAGG
1 TTATCAAAATTTCATAGTGTGG
*
4566 TTAT-AAGAATTTCATAGTGTGA
1 TTATCAA-AATTTCATAGTGTGG
* * *
4588 TTAACAAAATTTTATAAG-GAGG
1 TTATCAAAATTTCAT-AGTGTGG
* * * * *
4610 TTA-CTAATATTTTATTGGGAGG
1 TTATC-AAAATTTCATAGTGTGG
*
4632 TTATCAAAATTTCATAGTGTGA
1 TTATCAAAATTTCATAGTGTGG
**
4654 TTATCAAAATTTTTTAGTGTGG
1 TTATCAAAATTTCATAGTGTGG
4676 TTATCAAAATTTCATA
1 TTATCAAAATTTCATA
4692 TAAAGGTTAT
Statistics
Matches: 99, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
21 4 0.04
22 90 0.91
23 5 0.05
ACGTcount: A:0.36, C:0.07, G:0.16, T:0.40
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTGTGG
Found at i:4699 original size:66 final size:65
Alignment explanation
Indices: 4544--4705 Score: 168
Period size: 66 Copynumber: 2.5 Consensus size: 65
4534 ATAAAAAAGA
* **
4544 TTATCAAAATATCATAGCGAGGTTATAAGAATTTCATAGTGTGATTAACAAAATTTTATAAGGAG
1 TTATCAAAATTTCATATAGAGGTTATAA-AATTTCATAGTGTGATTAACAAAATTTTATAAGGAG
4609 G
65 G
* * * * *
4610 TTA-CTAATATTTTAT-TGGGAGGTTATCAAAATTTCATAGTGTGATTATCAAAATTTT-TTAGT
1 TTATC-AAAATTTCATAT-AGAGGTTAT-AAAATTTCATAGTGTGATTAACAAAATTTTATAAG-
*
4672 GTGG
62 GAGG
*
4676 TTATCAAAATTTCATATAAAGGTTATAAAA
1 TTATCAAAATTTCATATAGAGGTTATAAAA
4706 GTCTCAATTT
Statistics
Matches: 78, Mismatches: 12, Indels: 13
0.76 0.12 0.13
Matches are distributed among these distances:
65 8 0.10
66 66 0.85
67 4 0.05
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.39
Consensus pattern (65 bp):
TTATCAAAATTTCATATAGAGGTTATAAAATTTCATAGTGTGATTAACAAAATTTTATAAGGAGG
Found at i:4945 original size:22 final size:22
Alignment explanation
Indices: 4831--4955 Score: 101
Period size: 22 Copynumber: 5.7 Consensus size: 22
4821 TTATAGTGTT
*
4831 GTTATCAAAATTTTA-AAACGAG
1 GTTATCAAAATTTCATAAA-GAG
* * * *
4853 GTTATCAATATTACATAATGTG
1 GTTATCAAAATTTCATAAAGAG
* * *
4875 ATTATCAAAATTTCATAGAGGG
1 GTTATCAAAATTTCATAAAGAG
* * *
4897 GTCAACAAAATTTTATAGAA-AG
1 GTTATCAAAATTTCATA-AAGAG
4919 GTTATCAAAATTTCATAAAGAG
1 GTTATCAAAATTTCATAAAGAG
* *
4941 TTTATCAAACTTTCA
1 GTTATCAAAATTTCA
4956 AAATGTGATT
Statistics
Matches: 78, Mismatches: 22, Indels: 6
0.74 0.21 0.06
Matches are distributed among these distances:
21 2 0.03
22 73 0.94
23 3 0.04
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.34
Consensus pattern (22 bp):
GTTATCAAAATTTCATAAAGAG
Found at i:5189 original size:60 final size:60
Alignment explanation
Indices: 5123--5284 Score: 263
Period size: 60 Copynumber: 2.7 Consensus size: 60
5113 GCTAATTGCT
* *
5123 CAAATAAGGGTCTAACGTTTGTC-AAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACG-TTATCAAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGC
* *
5183 CAAATAAGGGCCTAACGTTATCGAAAATGCTCAAATAAGGGTCCGATCTTTTAATTTGGC
1 CAAATAAGGGCCTAACGTTATCAAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGC
*
5243 CAAATAAGGGCCTAACGTTATCAAAAATGCTCTAATAAGGGC
1 CAAATAAGGGCCTAACGTTATCAAAAATGCTCAAATAAGGGC
5285 ATAGCGTCAG
Statistics
Matches: 95, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
59 4 0.04
60 91 0.96
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.27
Consensus pattern (60 bp):
CAAATAAGGGCCTAACGTTATCAAAAATGCTCAAATAAGGGCCCGATCTTTTAATTTGGC
Found at i:5221 original size:31 final size:30
Alignment explanation
Indices: 5119--5284 Score: 110
Period size: 31 Copynumber: 5.5 Consensus size: 30
5109 TTTGGCTAAT
* *
5119 TGCTCAAATAAGGGTCTAACGTTTGTCAAAA
1 TGCTCAAATAAGGGCCTAACGTTTCT-AAAA
* * **
5150 TGCTCAAATAAGGGCCCGATC-TTT-TAATT
1 TGCTCAAATAAGGG-CCTAACGTTTCTAAAA
*
5179 TGGC-CAAATAAGGGCCTAACGTTATCGAAAA
1 T-GCTCAAATAAGGGCCTAACGTT-TCTAAAA
* * **
5210 TGCTCAAATAAGGGTCCGATC-TTT-TAATT
1 TGCTCAAATAAGGG-CCTAACGTTTCTAAAA
*
5239 TGGC-CAAATAAGGGCCTAACGTTATCAAAAA
1 T-GCTCAAATAAGGGCCTAACGTT-TCTAAAA
*
5270 TGCTCTAATAAGGGC
1 TGCTCAAATAAGGGC
5285 ATAGCGTCAG
Statistics
Matches: 102, Mismatches: 21, Indels: 24
0.69 0.14 0.16
Matches are distributed among these distances:
28 8 0.08
29 30 0.29
30 12 0.12
31 45 0.44
32 7 0.07
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (30 bp):
TGCTCAAATAAGGGCCTAACGTTTCTAAAA
Found at i:5252 original size:29 final size:28
Alignment explanation
Indices: 5154--5254 Score: 96
Period size: 29 Copynumber: 3.4 Consensus size: 28
5144 TCAAAATGCT
5154 CAAATAAGGGCCCGATCTTTTAATTTGGC
1 CAAATAAGGG-CCGATCTTTTAATTTGGC
* * * **
5183 CAAATAAGGGCCTAACGTTATCGAAAAT-GC
1 CAAATAAGGGCCGATC-TT-T-TAATTTGGC
5213 TCAAATAAGGGTCCGATCTTTTAATTTGGC
1 -CAAATAAGGG-CCGATCTTTTAATTTGGC
5243 CAAATAAGGGCC
1 CAAATAAGGGCC
5255 TAACGTTATC
Statistics
Matches: 56, Mismatches: 10, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
28 6 0.11
29 25 0.45
30 6 0.11
31 15 0.27
32 4 0.07
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (28 bp):
CAAATAAGGGCCGATCTTTTAATTTGGC
Found at i:5363 original size:31 final size:30
Alignment explanation
Indices: 5328--5489 Score: 95
Period size: 31 Copynumber: 5.4 Consensus size: 30
5318 CGATGTCAGA
5328 CCCTTATTTGAGCATTTTGGCAAACGTTAGG
1 CCCTTATTTGAGCATTTTGG-AAACGTTAGG
** * *
5359 CCCTTATTTG-GCTAAATT--AAGA-GATCGG
1 CCCTTATTTGAGC-ATTTTGGAA-ACGTTAGG
* * *
5387 ACCCTTATGTGAGCATTTTGGTAAACATTAGA
1 -CCCTTATTTGAGCATTTTGG-AAACGTTAGG
** * * *
5419 CCCTTATTTG-GCCAAATT--AAAAGATCAGA
1 CCCTTATTTGAG-CATTTTGGAAACG-TTAGG
5448 CCCTTATTTGAGCATTTTGGCAAACGTTAGG
1 CCCTTATTTGAGCATTTTGG-AAACGTTAGG
5479 CCCTTATTTGA
1 CCCTTATTTGA
5490 ACAATTAGCC
Statistics
Matches: 95, Mismatches: 22, Indels: 28
0.66 0.15 0.19
Matches are distributed among these distances:
28 9 0.09
29 31 0.33
30 6 0.06
31 41 0.43
32 8 0.08
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (30 bp):
CCCTTATTTGAGCATTTTGGAAACGTTAGG
Found at i:5423 original size:60 final size:60
Alignment explanation
Indices: 5323--5488 Score: 269
Period size: 60 Copynumber: 2.8 Consensus size: 60
5313 ATTTTCGATG
* *
5323 TCAGACCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCTAAATTAAGAGA
1 TCAGACCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGA
* * * * *
5383 TCGGACCCTTATGTGAGCATTTTGGTAAACATTAGACCCTTATTTGGCCAAATTAAAAGA
1 TCAGACCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGA
5443 TCAGACCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTG
1 TCAGACCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTG
5489 AACAATTAGC
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 94 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (60 bp):
TCAGACCCTTATTTGAGCATTTTGGCAAACGTTAGGCCCTTATTTGGCCAAATTAAAAGA
Found at i:5656 original size:23 final size:23
Alignment explanation
Indices: 5601--5707 Score: 78
Period size: 23 Copynumber: 4.7 Consensus size: 23
5591 AAATTTGTAG
* *
5601 TTATCAAGATTTCATA-AG-GAGA
1 TTATCAAAATTTCATAGAGAG-GT
* * *
5623 TTATCAGAATTTGATAGGGAGGT
1 TTATCAAAATTTCATAGAGAGGT
* * *
5646 TTATTAAAATTTTATA-AAATGGT
1 TTATCAAAATTTCATAGAGA-GGT
*
5669 TTATCAAAATTTCATAGCGAGG-
1 TTATCAAAATTTCATAGAGAGGT
*
5691 TTATCACAATTTCATAG
1 TTATCAAAATTTCATAG
5708 TGTGATTATG
Statistics
Matches: 66, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
22 30 0.45
23 34 0.52
24 2 0.03
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.37
Consensus pattern (23 bp):
TTATCAAAATTTCATAGAGAGGT
Found at i:5716 original size:22 final size:22
Alignment explanation
Indices: 5669--5737 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
5659 ATAAAATGGT
* * *
5669 TTATCAAAATTTCATAGCGAGG
1 TTATCAAAATTTCATAGTGTGA
*
5691 TTATCACAATTTCATAGTGTGA
1 TTATCAAAATTTCATAGTGTGA
*
5713 TTATGAAAATTTCA-AGGTGTGA
1 TTATCAAAATTTCATA-GTGTGA
5735 TTA
1 TTA
5738 CTAACAATTC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
21 1 0.03
22 39 0.98
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (22 bp):
TTATCAAAATTTCATAGTGTGA
Found at i:5952 original size:22 final size:22
Alignment explanation
Indices: 5843--5972 Score: 93
Period size: 22 Copynumber: 6.0 Consensus size: 22
5833 TAGTGAGGCC
* * *
5843 ATCAAAATTCCTTAAGGAGGTT
1 ATCAAAATTTCATAAGAAGGTT
*
5865 AACAAAATTTCATAAGAAGGTT
1 ATCAAAATTTCATAAGAAGGTT
* ** *
5887 A-AAAAATTTTTTAAAAAGGTT
1 ATCAAAATTTCATAAGAAGGTT
* * * **
5908 CTCGAAATTCCAT-AGTATTGTT
1 ATCAAAATTTCATAAG-AAGGTT
* *
5930 ATTAAAATTTCATAGGAAGGTT
1 ATCAAAATTTCATAAGAAGGTT
*
5952 ATCAAAATTTTATAAGAAGGT
1 ATCAAAATTTCATAAGAAGGT
5973 CATAAAAGCA
Statistics
Matches: 78, Mismatches: 27, Indels: 6
0.70 0.24 0.05
Matches are distributed among these distances:
21 17 0.22
22 60 0.77
23 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.15, T:0.35
Consensus pattern (22 bp):
ATCAAAATTTCATAAGAAGGTT
Found at i:7827 original size:32 final size:32
Alignment explanation
Indices: 7780--7847 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
7770 TCAGGTTAAG
*
7780 TCGGGTTCGGATCAATTTCAAATTAGGTCAAT
1 TCGGGTCCGGATCAATTTCAAATTAGGTCAAT
* *
7812 TCGGGTCCGGGTCAATTTCAAATTAGGTTAAT
1 TCGGGTCCGGATCAATTTCAAATTAGGTCAAT
7844 TCGG
1 TCGG
7848 ATTCGAGTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (32 bp):
TCGGGTCCGGATCAATTTCAAATTAGGTCAAT
Found at i:8506 original size:21 final size:20
Alignment explanation
Indices: 8480--8532 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
8470 GGACACATAT
* *
8480 CACTGACGGTCTGCTAAACTC
1 CACTGACGGT-GGATAAACTC
*
8501 CACTGACAGTGGATAAACTC
1 CACTGACGGTGGATAAACTC
*
8521 CACTAACGGTGG
1 CACTGACGGTGG
8533 GTACTATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (20 bp):
CACTGACGGTGGATAAACTC
Found at i:13796 original size:18 final size:20
Alignment explanation
Indices: 13775--13811 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
13765 GATGGAAAAA
13775 AAATTAAA-AATG-GGAATC
1 AAATTAAATAATGAGGAATC
13793 AAATTAAATAATGAGGAAT
1 AAATTAAATAATGAGGAAT
13812 TTTATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 4 0.24
20 5 0.29
ACGTcount: A:0.57, C:0.03, G:0.16, T:0.24
Consensus pattern (20 bp):
AAATTAAATAATGAGGAATC
Done.