Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024652.1 Corchorus olitorius cultivar O-4 contig24685, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4465
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35


Found at i:1158 original size:30 final size:29

Alignment explanation


    Indices: 1114--1178  Score: 78
    Period size: 30  Copynumber: 2.2  Consensus size: 29

       1104 TATAACTCAT

                             *             
       1114 GAAAGATAAATTATTTTGAGAAG-CTAAAAA
          1 GAAA-ATAAATTATTTTAAGAAGTC-AAAAA

                                *         
       1144 GAAAATAGAATTATTTTAAGGAGTCAAAAA
          1 GAAAATA-AATTATTTTAAGAAGTCAAAAA

                 
       1174 GAAAA
          1 GAAAA

       1179 AAAGTTCAAC


Statistics
Matches: 31,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
  29    3  0.10
  30   27  0.87
  31    1  0.03

ACGTcount: A:0.55, C:0.03, G:0.17, T:0.25


Consensus pattern (29 bp):   
GAAAATAAATTATTTTAAGAAGTCAAAAA
Done.