Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024653.1 Corchorus olitorius cultivar O-4 contig24686, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37480

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
342--402
32
1.9
32
90
6
97
49
6
18
26
1.71
1296--1411
44
2.7
42
88
6
160
37
27
6
28
1.80
4907--5057
75
2.0
75
89
1
232
48
11
17
23
1.79
14412--14455
22
2.0
22
86
8
63
40
13
4
40
1.65
14545--14905
22
16.6
22
73
13
259
34
16
9
39
1.81
14545--15316
44
17.4
43
67
17
225
35
17
9
38
1.82
15011--15226
22
9.7
23
73
13
152
34
15
9
40
1.80
15262--15399
22
6.4
22
71
15
101
38
16
8
36
1.80
15433--15635
66
3.1
66
83
6
193
36
19
9
34
1.84
15481--15635
22
7.0
22
73
12
131
35
18
10
36
1.85
15482--15635
66
2.3
66
87
7
224
35
17
10
36
1.84
15766--15791
6
4.3
6
100
0
52
15
0
34
50
1.45
19375--19465
42
2.2
42
88
2
130
35
5
18
40
1.74
21046--21085
21
2.1
19
86
13
55
40
20
22
17
1.92
31341--31537
22
9.1
22
67
11
95
38
9
9
42
1.70
31346--31537
45
4.4
44
75
8
112
39
9
9
42
1.70
31390--31475
45
1.9
44
85
2
118
43
5
9
41
1.61
31387--31489
45
2.3
44
81
1
116
40
5
9
43
1.62
32324--32351
1
28.0
1
100
0
56
0
0
0
100
0.00
34267--34581
158
2.0
158
97
0
594
27
19
22
30
1.98
34955--35062
53
2.0
53
100
0
216
26
15
12
44
1.83
35081--35227
73
2.0
73
100
0
294
36
10
9
42
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36504--36546
22
2.0
22
90
0
68
62
6
13
16
1.51

Tables:   1

The End!