Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024654.1 Corchorus olitorius cultivar O-4 contig24687, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2153
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:1048 original size:11 final size:11

Alignment explanation


    Indices: 1032--1071  Score: 66
    Period size: 11  Copynumber: 3.8  Consensus size: 11

       1022 CACCTTTTTT

                       
       1032 TCAAGAACACC
          1 TCAAGAACACC

                       
       1043 TCAAGAACACC
          1 TCAAGAACACC

                       
       1054 TCAAGAACA--
          1 TCAAGAACACC

                     
       1063 TCAAGAACA
          1 TCAAGAACA

       1072 AACCCAGCCA


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   9    9  0.31
  11   20  0.69

ACGTcount: A:0.50, C:0.30, G:0.10, T:0.10


Consensus pattern (11 bp):   
TCAAGAACACC

Found at i:1068 original size:20 final size:21

Alignment explanation


    Indices: 1032--1071  Score: 64
    Period size: 20  Copynumber: 1.9  Consensus size: 21

       1022 CACCTTTTTT

                                  
       1032 TCAAGAACACCTCAAGAACACC
          1 TCAAGAACA-CTCAAGAACACC

                               
       1054 TCAAGAACA-TCAAGAACA
          1 TCAAGAACACTCAAGAACA

       1072 AACCCAGCCA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  20    9  0.50
  22    9  0.50

ACGTcount: A:0.50, C:0.30, G:0.10, T:0.10


Consensus pattern (21 bp):   
TCAAGAACACTCAAGAACACC
Done.