Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024660.1 Corchorus olitorius cultivar O-4 contig24693, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36188

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2927--2968
18
2.3
19
84
12
52
66
14
7
11
1.43
3619--3701
32
2.7
30
80
7
94
24
20
9
45
1.80
7951--8091
28
5.1
27
83
8
142
42
26
14
17
1.87
7978--8223
29
8.7
29
87
3
254
41
21
15
20
1.89
14775--14816
15
2.7
15
92
3
66
11
9
14
64
1.50
15290--15368
23
3.5
23
81
10
92
35
10
15
39
1.81
15290--15359
24
3.0
24
79
10
81
40
10
12
37
1.77
15292--15412
23
4.9
24
71
22
74
40
10
14
34
1.80
18582--18634
21
2.5
21
87
0
70
16
47
22
13
1.82
21513--21554
15
2.7
15
92
3
66
11
9
14
64
1.50
24890--24932
5
8.8
5
79
5
52
72
25
2
0
0.97
24885--24937
10
5.3
10
80
15
56
67
28
3
0
1.07
25415--25938
48
11.8
48
68
17
308
43
21
22
13
1.87
25568--25972
40
9.3
40
69
16
243
42
20
23
12
1.87
25417--25972
88
6.3
88
87
2
769
42
21
22
13
1.87
26438--26538
51
2.0
51
86
1
141
38
11
4
44
1.63
26467--26568
51
2.0
53
86
3
145
38
12
3
45
1.61
26558--27035
50
9.5
50
79
5
507
39
13
3
42
1.63
26616--27035
100
4.2
101
93
1
666
40
14
3
42
1.63
30037--30064
8
3.5
8
100
0
56
60
14
14
10
1.58
30704--30774
30
2.4
30
77
11
74
22
5
1
70
1.16

Tables:   1

The End!