Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024664.1 Corchorus olitorius cultivar O-4 contig24697, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3352
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35


Found at i:2303 original size:16 final size:16

Alignment explanation


    Indices: 2268--2297  Score: 53
    Period size: 15  Copynumber: 1.9  Consensus size: 16

       2258 CTTTGCTTTG

                            
       2268 TTTTCTAGTTTAATTA
          1 TTTTCTAGTTTAATTA

                           
       2284 TTTTCT-GTTTAATT
          1 TTTTCTAGTTTAATT

       2298 GCTTTTTGTC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    8  0.57
  16    6  0.43

ACGTcount: A:0.20, C:0.07, G:0.07, T:0.67


Consensus pattern (16 bp):   
TTTTCTAGTTTAATTA

Found at i:2714 original size:28 final size:27

Alignment explanation


    Indices: 2656--2718  Score: 83
    Period size: 28  Copynumber: 2.3  Consensus size: 27

       2646 TTTTGCATCG

                                      * 
       2656 AAAAAAAAAAGTTTTTGCGTCATATTTA
          1 AAAAAAAAAAGTTTTTGCGTCATA-TAA

                                         
       2684 AAAAAAAAAAGTTTTGCTGCGTCATA-AA
          1 AAAAAAAAAAGTTTT--TGCGTCATATAA

                   
       2712 AAAAAAA
          1 AAAAAAA

       2719 TCTTGTTCTT


Statistics
Matches: 32,  Mismatches: 1, Indels: 4
        0.86            0.03        0.11

Matches are distributed among these distances:
  28   23  0.72
  30    9  0.28

ACGTcount: A:0.54, C:0.08, G:0.11, T:0.27


Consensus pattern (27 bp):   
AAAAAAAAAAGTTTTTGCGTCATATAA
Done.