Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024665.1 Corchorus olitorius cultivar O-4 contig24698, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1332
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28


Found at i:1185 original size:16 final size:15

Alignment explanation


    Indices: 1147--1188  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       1137 ACAGAGGTTG

                           
       1147 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                    *      
       1162 ACAGAAAATAATTAA
          1 ACAGAAAACAATTAA

                        
       1177 ACTAGAAAACAA
          1 AC-AGAAAACAA

       1189 AACAAAGTAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  15   16  0.67
  16    8  0.33

ACGTcount: A:0.67, C:0.12, G:0.07, T:0.14


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.