Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024670.1 Corchorus olitorius cultivar O-4 contig24703, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1982
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27


Found at i:1660 original size:76 final size:76

Alignment explanation


    Indices: 1523--1673  Score: 173
    Period size: 76  Copynumber: 2.0  Consensus size: 76

       1513 ACAAGGAACC

                                       *                       *           * 
       1523 CGACTCCACCTGGGCGCCCACATGGTTGCCTTGAGCACCCATGTGGTTTGCTTGAGAACCCAGGT
          1 CGACTCCACCTGGGCGCCCACATGGTTACCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT

                       
       1588 GGGCAGTGTCA
         66 GGGCAGTGTCA

                    *     *              *                            **     
       1599 CGACTCCAGCTGGGTGCCCACATGGTTTATC-TGAAG-ACCCATGT-GTTTCGCCTGATCACCCA
          1 CGACTCCACCTGGGCGCCCACATGG-TTACCTTG-AGCACCCATGTGGTTT-GCCTGAGAACCCA

                   *     
       1661 GATGGGCTGTGTC
         63 GATGGGCAGTGTC

       1674 TTAACTCATC


Statistics
Matches: 63,  Mismatches: 9, Indels: 6
        0.81            0.12        0.08

Matches are distributed among these distances:
  75    4  0.06
  76   54  0.86
  77    5  0.08

ACGTcount: A:0.17, C:0.30, G:0.28, T:0.25


Consensus pattern (76 bp):   
CGACTCCACCTGGGCGCCCACATGGTTACCTTGAGCACCCATGTGGTTTGCCTGAGAACCCAGAT
GGGCAGTGTCA
Done.