Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024671.1 Corchorus olitorius cultivar O-4 contig24704, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3655
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:2272 original size:9 final size:8

Alignment explanation


    Indices: 2241--2274  Score: 50
    Period size: 8  Copynumber: 4.1  Consensus size: 8

       2231 CAACTTCTCC

                *   
       2241 AAAACTTG
          1 AAAATTTG

                    
       2249 AAAATTTG
          1 AAAATTTG

                    
       2257 AAAATTTG
          1 AAAATTTG

                     
       2265 AGAAATTTG
          1 A-AAATTTG

             
       2274 A
          1 A

       2275 TGGAAAAGGT


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
   8   16  0.67
   9    8  0.33

ACGTcount: A:0.50, C:0.03, G:0.15, T:0.32


Consensus pattern (8 bp):   
AAAATTTG

Done.