Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024675.1 Corchorus olitorius cultivar O-4 contig24708, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53864

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8265--8414
52
2.9
51
86
1
210
28
17
15
38
1.90
11097--11139
21
2.0
21
100
0
86
53
9
9
27
1.63
12846--12907
14
4.4
14
72
11
54
11
6
38
43
1.66
13356--13403
9
5.2
9
75
5
51
45
2
2
50
1.25
13592--13633
21
2.0
21
100
0
84
23
4
38
33
1.76
13630--13667
15
2.5
15
86
0
58
36
5
31
26
1.79
15956--16002
18
2.6
18
80
6
51
38
17
23
21
1.93
16908--16947
19
2.1
19
95
0
71
30
15
37
17
1.90
22053--22105
20
2.7
20
88
5
72
79
15
1
3
0.96
22057--22105
6
7.7
6
84
11
62
79
14
2
4
0.97
22053--22105
26
2.0
26
85
7
72
79
15
1
3
0.96
23628--23769
71
2.0
71
92
0
239
26
11
18
43
1.84
31808--31847
7
5.7
7
100
0
80
75
12
0
12
1.06
31792--31855
7
9.3
7
86
6
60
79
7
1
10
0.99
33668--33723
27
2.0
28
86
3
78
37
16
12
33
1.86
33753--34253
168
3.0
167
88
4
724
27
19
17
35
1.94
34294--34749
30
15.1
30
88
2
601
18
15
19
45
1.85
34837--34972
39
3.5
38
76
14
118
22
17
16
43
1.88
34926--35006
40
2.0
43
82
7
105
22
19
17
40
1.91
35266--35342
28
2.8
28
97
0
145
16
15
25
41
1.88
35931--36002
27
2.7
27
88
0
99
16
16
26
40
1.90
40783--40816
17
1.9
18
94
5
61
70
8
14
5
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43708--43742
13
2.8
13
86
4
54
80
0
0
20
0.72
45216--45297
28
3.1
26
81
11
96
18
21
2
57
1.52
45217--45309
25
3.5
26
80
14
93
17
22
4
55
1.59
45272--45408
35
4.1
32
80
10
134
24
16
3
55
1.57
45303--45400
32
2.9
33
87
6
144
29
14
2
54
1.52
45446--45816
21
17.7
20
69
19
167
22
20
5
51
1.67
45560--45648
7
12.7
7
72
8
56
16
21
5
56
1.61
45568--45660
27
3.4
27
90
3
141
19
20
6
53
1.66
45601--45776
71
2.5
71
88
4
250
23
21
4
50
1.67
45678--45740
28
2.2
29
94
2
110
25
20
1
52
1.56
49234--49284
18
2.8
18
93
0
84
35
15
13
35
1.87
49498--49543
22
2.0
23
95
4
85
47
17
21
13
1.81
50044--50070
2
13.5
2
100
0
54
51
0
0
48
1.00
50465--52946
332
7.5
330
76
10
1788
36
14
14
34
1.87

Tables:   1

The End!