Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024679.1 Corchorus olitorius cultivar O-4 contig24712, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60407

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8438--8551
36
3.1
36
85
8
142
57
10
21
10
1.63
9372--10058
59
11.6
59
93
0
1144
25
15
15
43
1.87
10295--10450
29
5.4
29
77
7
117
19
19
23
37
1.94
10304--10441
58
2.4
58
82
10
167
18
18
23
39
1.92
15613--15653
21
1.9
22
90
5
66
9
7
14
68
1.39
15613--15653
22
1.9
21
85
5
55
9
7
14
68
1.39
17412--17443
16
2.0
16
93
0
55
46
3
6
43
1.44
17487--18397
455
2.0
451
95
2
1639
40
13
12
32
1.83
20260--20305
2
23.0
2
86
0
65
50
6
0
43
1.28
20259--20302
16
2.8
16
96
0
79
50
9
0
40
1.34
21393--21436
19
2.4
19
84
3
54
45
0
2
52
1.13
23892--23927
19
1.9
18
88
5
54
30
22
8
38
1.83
31469--31579
52
2.1
52
100
0
222
37
12
10
38
1.78
32913--32938
13
2.0
13
100
0
52
15
0
30
53
1.42
33295--33338
19
2.4
18
88
3
61
47
0
2
50
1.13
56509--57336
439
1.9
439
86
2
1198
27
13
17
41
1.87
59273--59311
20
2.1
19
85
9
53
17
28
17
35
1.94
59469--59530
31
1.9
33
83
9
83
14
11
1
72
1.19
59936--59967
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!