Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024680.1 Corchorus olitorius cultivar O-4 contig24713, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5016
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36


Found at i:4841 original size:46 final size:47

Alignment explanation


    Indices: 4751--4871  Score: 133
    Period size: 46  Copynumber: 2.6  Consensus size: 47

       4741 TTTAATTATA

                               *         *                  
       4751 ATTTTAAAGCCCATTTCCTCA-TTAGTTTCATTCAAAGTCCATTCC-C
          1 ATTTTAAAGCCCATTTCCTTATTTAG-TTAATTCAAAGTCCATTCCTC

                                               *           *
       4797 ATTTTAAAGCCCATTTCCTTATTTAG-TAATTCAAGGTCCAATTCCTT
          1 ATTTTAAAGCCCATTTCCTTATTTAGTTAATTCAAAGTCC-ATTCCTC

            *    *                       
       4844 TTTTTTAAGACCCATTTCCTTA-TTAGTT
          1 ATTTTAAAG-CCCATTTCCTTATTTAGTT

       4872 TCTCAAAATG


Statistics
Matches: 64,  Mismatches: 6, Indels: 8
        0.82            0.08        0.10

Matches are distributed among these distances:
  45   11  0.17
  46   25  0.39
  47   15  0.23
  48   13  0.20

ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44


Consensus pattern (47 bp):   
ATTTTAAAGCCCATTTCCTTATTTAGTTAATTCAAAGTCCATTCCTC
Done.