genome.fa.s24682.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024682.1 Corchorus olitorius cultivar O-4 contig24715, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56139

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2799--2889	38	2.4	38	80	10	96	71	1	27	0	0.93
2848--2879	14	2.3	14	94	0	55	65	0	34	0	0.93
10372--10731	90	3.9	90	88	1	468	31	18	17	31	1.95
10440--10731	30	9.7	30	94	0	467	30	20	18	30	1.96
12310--12404	29	3.2	29	92	3	154	48	12	17	21	1.80
12535--12613	31	2.5	31	95	0	140	34	16	12	36	1.87
12533--12669	60	2.2	62	82	5	154	31	15	13	39	1.86
12533--12669	31	4.5	29	83	3	121	31	15	13	39	1.86
13573--13605	15	2.1	16	94	5	59	48	0	0	51	1.00
13636--13749	60	1.9	60	87	0	165	38	12	16	32	1.86
13636--13776	31	4.6	31	77	6	135	39	12	16	32	1.85
13906--13972	31	2.2	31	89	5	102	20	16	11	50	1.76
14730--14807	22	3.4	24	70	24	69	35	2	2	58	1.25
14757--14805	25	2.0	25	84	8	64	38	0	2	59	1.09
15429--15495	2	37.5	2	71	21	51	52	0	1	46	1.09
15429--15493	21	2.9	22	84	11	78	52	0	1	46	1.10
15429--15504	30	2.5	31	77	12	86	52	0	1	46	1.08
16904--17002	52	1.9	52	82	0	126	12	31	39	17	1.86
22415--22516	51	2.0	50	80	12	111	21	22	13	42	1.88
32703--33102	198	2.0	196	92	0	656	33	16	19	31	1.94
33943--33968	13	2.0	13	100	0	52	15	0	30	53	1.42
34293--34344	19	2.8	19	72	13	54	50	0	1	48	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35691--35792	51	2.0	50	80	12	111	21	22	13	42	1.88
45308--45354	24	2.0	23	83	4	58	42	4	0	53	1.20
46894--47022	50	2.6	50	86	6	183	24	10	35	29	1.88
48417--48504	31	2.8	31	89	0	131	36	17	18	28	1.93
51096--51135	20	2.0	20	85	0	53	20	0	20	60	1.37
53470--53501	2	16.0	2	100	0	64	50	0	0	50	1.00
55155--55312	83	1.9	85	86	6	232	27	14	22	34	1.93

Tables:   1

The End!