Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024694.1 Corchorus olitorius cultivar O-4 contig24727, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42983

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
287--335
24
2.0
24
96
0
89
32
20
14
32
1.92
530--569
19
2.1
19
95
0
71
5
25
2
67
1.23
1274--1322
24
2.0
24
100
0
98
40
12
8
38
1.72
1274--1314
14
3.2
14
74
25
54
39
12
9
39
1.76
1805--1873
36
1.9
36
100
0
138
17
23
13
46
1.83
5160--5236
30
2.6
30
79
4
93
15
22
16
45
1.85
5353--5470
31
3.9
30
76
12
100
48
14
16
21
1.81
5417--5787
183
2.0
183
98
0
724
35
16
19
28
1.94
29798--29839
11
3.7
11
90
3
66
0
2
16
80
0.81
29797--29839
17
2.6
16
85
10
59
0
2
16
81
0.79
29798--29839
6
7.3
6
84
10
61
0
2
16
80
0.81
31878--31937
30
2.0
30
96
0
111
53
3
18
25
1.60
32579--32617
19
2.1
19
100
0
78
30
5
0
64
1.15
34762--34888
61
2.1
61
90
0
200
25
18
15
39
1.91
36027--36190
82
2.0
82
95
0
292
33
15
23
27
1.95
40696--40736
22
1.9
21
90
5
64
70
2
4
21
1.18

Tables:   1

The End!