Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024698.1 Corchorus olitorius cultivar O-4 contig24731, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5015
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3101 original size:21 final size:21

Alignment explanation


    Indices: 3068--3116  Score: 55
    Period size: 21  Copynumber: 2.3  Consensus size: 21

       3058 AAGAATTGTA

                          **     
       3068 GCTT-CTTGGAAATGGCTCTT
          1 GCTTCCTTGGAAATCCCTCTT

                    *            
       3088 GCTTCCTTTGAAATCCCTCTT
          1 GCTTCCTTGGAAATCCCTCTT

                    
       3109 GCATTCCT
          1 GC-TTCCT

       3117 AAAGCATTGA


Statistics
Matches: 24,  Mismatches: 3, Indels: 2
        0.83            0.10        0.07

Matches are distributed among these distances:
  20    4  0.17
  21   15  0.62
  22    5  0.21

ACGTcount: A:0.14, C:0.29, G:0.16, T:0.41


Consensus pattern (21 bp):   
GCTTCCTTGGAAATCCCTCTT

Found at i:4287 original size:27 final size:27

Alignment explanation


    Indices: 4243--4298  Score: 71
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       4233 AAAAGTAACT

                     *                  
       4243 AAGAAAAATGAACG-AAAATAAAAGAAA
          1 AAGAAAAATCAACGAAAAATAAAA-AAA

                                        
       4270 AAGAAAAA-CAACGAAAAAATAAAAAAA
          1 AAGAAAAATCAACG-AAAAATAAAAAAA

              
       4297 AA
          1 AA

       4299 TAAGGGTAAG


Statistics
Matches: 26,  Mismatches: 1, Indels: 4
        0.84            0.03        0.13

Matches are distributed among these distances:
  26    4  0.15
  27   13  0.50
  28    9  0.35

ACGTcount: A:0.79, C:0.05, G:0.11, T:0.05


Consensus pattern (27 bp):   
AAGAAAAATCAACGAAAAATAAAAAAA

Done.