Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024699.1 Corchorus olitorius cultivar O-4 contig24732, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19735
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33


Found at i:963 original size:25 final size:25

Alignment explanation


    Indices: 915--962  Score: 80
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        905 AATCCTTGTT

                                     
        915 TAATTATGCCTTGTTATTTATTTTC
          1 TAATTATGCCTTGTTATTTATTTTC

                           *        
        940 TAATTATGCCTTG-TCTTTATTTT
          1 TAATTATGCCTTGTTATTTATTTT

        963 TTGGCTTGTA


Statistics
Matches: 22,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  24    9  0.41
  25   13  0.59

ACGTcount: A:0.19, C:0.12, G:0.08, T:0.60


Consensus pattern (25 bp):   
TAATTATGCCTTGTTATTTATTTTC

Found at i:14890 original size:25 final size:25

Alignment explanation


    Indices: 14869--14916  Score: 87
    Period size: 25  Copynumber: 1.9  Consensus size: 25

      14859 GGTAAACACT

                 *                   
      14869 CATGTTCTTGCGTTTGGAAAACGAG
          1 CATGTGCTTGCGTTTGGAAAACGAG

                                   
      14894 CATGTGCTTGCGTTTGGAAAACG
          1 CATGTGCTTGCGTTTGGAAAACG

      14917 CATGGGCTGC


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.23, C:0.17, G:0.29, T:0.31


Consensus pattern (25 bp):   
CATGTGCTTGCGTTTGGAAAACGAG
Done.