Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024701.1 Corchorus olitorius cultivar O-4 contig24734, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67723

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2194--2226
16
2.0
17
88
5
50
27
18
21
33
1.96
4957--4993
15
2.4
16
90
4
58
64
10
10
13
1.49
7357--7387
16
1.9
16
93
0
53
35
9
6
48
1.62
8262--8335
21
3.4
21
79
3
76
12
21
47
18
1.81
10729--10791
30
2.1
29
82
8
74
38
12
9
39
1.76
10810--10904
30
3.2
29
70
21
81
50
13
3
32
1.57
11259--11298
15
2.6
16
92
4
64
65
12
10
12
1.49
12683--12737
19
2.9
18
77
17
67
29
23
9
38
1.85
17475--17531
30
1.9
30
85
7
80
36
17
7
38
1.77
23416--23508
33
2.9
31
82
6
114
18
23
21
36
1.95
23456--23681
113
2.0
113
96
0
416
25
19
25
29
1.99
24033--24078
3
15.3
3
100
0
92
65
0
0
34
0.93
26092--26119
7
4.0
7
100
0
56
71
0
28
0
0.86
28923--28977
26
2.1
26
100
0
110
14
10
32
41
1.81
31869--31932
30
2.1
30
91
0
101
6
15
20
57
1.59
32359--32411
26
2.0
26
85
0
70
26
7
18
47
1.75
38161--38197
18
2.1
18
100
0
74
59
21
5
13
1.54
39686--39738
26
2.0
26
85
0
70
26
3
18
50
1.64
43609--43722
57
2.0
57
94
0
201
41
5
14
39
1.68
43982--44563
292
2.0
295
89
3
904
25
15
16
42
1.87
61769--61826
19
2.9
19
84
5
71
31
20
12
36
1.89
63560--63591
16
1.9
17
93
6
57
18
15
25
40
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66525--66550
11
2.4
11
100
0
52
7
15
7
69
1.35
67309--67350
15
2.7
15
92
3
66
11
9
14
64
1.50

Tables:   1

The End!