Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024703.1 Corchorus olitorius cultivar O-4 contig24736, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76981

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5485--5581
44
2.3
43
89
7
144
46
8
7
38
1.62
7667--7740
27
2.8
26
76
13
71
39
13
17
29
1.88
7718--7930
108
2.0
109
88
4
324
37
22
18
22
1.95
7718--7880
54
3.0
54
71
6
150
36
22
18
22
1.95
7736--7902
54
3.1
54
72
7
169
39
21
18
20
1.93
9723--9757
18
1.9
18
94
0
61
34
28
14
22
1.93
14066--14100
15
2.3
15
95
0
61
0
51
0
48
1.00
16808--17041
75
3.0
75
91
4
369
33
14
14
38
1.86
20736--20868
66
2.0
68
86
5
191
36
9
12
41
1.75
21182--21214
12
2.5
13
90
9
50
27
0
0
72
0.85
21455--21489
15
2.3
15
100
0
70
80
0
14
5
0.89
27035--27069
17
2.1
17
100
0
70
28
28
14
28
1.95
36335--36378
22
2.0
22
82
8
54
52
2
13
31
1.53
38991--39131
68
2.1
68
100
0
282
28
14
19
38
1.90
49865--49905
20
2.1
19
86
13
57
29
0
0
70
0.87
56049--56073
13
1.9
13
100
0
50
88
0
0
12
0.53
59775--59894
61
2.0
61
93
0
204
48
16
13
21
1.80
60321--60380
29
2.1
28
84
9
77
46
11
18
23
1.81
61993--62066
15
4.9
15
69
9
51
24
28
18
28
1.98
70842--70910
30
2.3
30
82
7
77
31
14
23
30
1.94
71871--71895
13
1.9
13
100
0
50
20
0
8
72
1.10

Tables:   1

The End!