Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024705.1 Corchorus olitorius cultivar O-4 contig24738, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4407
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32


Found at i:2433 original size:66 final size:66

Alignment explanation


    Indices: 2286--2472  Score: 306
    Period size: 66  Copynumber: 2.9  Consensus size: 66

       2276 CCGCATTAAC

                         *              *                            *      *
       2286 TTGATTCACCGAACCATCCTGAACTGTTCGAAAATGTGCTGCACCGAGCT--CCGAATTCCAATC
          1 TTGATTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAAATCCAATA

             
       2349 T
         66 T

                                                    *    *                   
       2350 TTGATTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTACACCTAGCTCACCGAAATCCAATA
          1 TTGATTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAAATCCAATA

             
       2415 T
         66 T

                                                                     
       2416 TTGATTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAA
          1 TTGATTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAA

       2473 TCCCAATCTT


Statistics
Matches: 113,  Mismatches: 8, Indels: 2
        0.92            0.07        0.02

Matches are distributed among these distances:
  64   46  0.41
  66   67  0.59

ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27


Consensus pattern (66 bp):   
TTGATTCACCGAATCATCCTGAACTGTTTGAAAATGTGCTGCACCGAGCTCACCGAAATCCAATA
T

Done.