Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024714.1 Corchorus olitorius cultivar O-4 contig24747, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2264
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30


Found at i:277 original size:21 final size:21

Alignment explanation


    Indices: 234--277  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        224 GTCCTGCACT

                          *      
        234 TTTTTTTCTGGGTGTATTCTC
          1 TTTTTTTCTGGGTGAATTCTC

                   *  *       *  
        255 TTTTTTTGTGTGTGAATTTTC
          1 TTTTTTTCTGGGTGAATTCTC

              
        276 TT
          1 TT

        278 ATCTGTTTTT


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.07, C:0.09, G:0.18, T:0.66


Consensus pattern (21 bp):   
TTTTTTTCTGGGTGAATTCTC

Found at i:1492 original size:15 final size:16

Alignment explanation


    Indices: 1467--1505  Score: 62
    Period size: 16  Copynumber: 2.4  Consensus size: 16

       1457 GAGATTGACA

                             
       1467 AAAAGCAATTAAAC-AG
          1 AAAA-CAATTAAACTAG

                            
       1483 AAAACAATTAAACTAG
          1 AAAACAATTAAACTAG

                   
       1499 AAAACAA
          1 AAAACAA

       1506 AGTAGAGTAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  15    9  0.41
  16   13  0.59

ACGTcount: A:0.67, C:0.13, G:0.08, T:0.13


Consensus pattern (16 bp):   
AAAACAATTAAACTAG
Done.