Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024715.1 Corchorus olitorius cultivar O-4 contig24748, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.36


Found at i:1061 original size:29 final size:29

Alignment explanation


    Indices: 1015--1090  Score: 98
    Period size: 29  Copynumber: 2.6  Consensus size: 29

       1005 TTAATTGACC

                       *               * 
       1015 TTTTTGCACATTCAGGGGCATTTTGGTTA
          1 TTTTTGCACATCCAGGGGCATTTTGGTCA

                    *    *               
       1044 TTTTTGCATATCCGGGGGCATTTTGGTCA
          1 TTTTTGCACATCCAGGGGCATTTTGGTCA

               *        *     
       1073 TTTCTGCACATCTAGGGG
          1 TTTTTGCACATCCAGGGG


Statistics
Matches: 39,  Mismatches: 8, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  29   39  1.00

ACGTcount: A:0.16, C:0.17, G:0.26, T:0.41


Consensus pattern (29 bp):   
TTTTTGCACATCCAGGGGCATTTTGGTCA
Done.