Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024716.1 Corchorus olitorius cultivar O-4 contig24749, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5315
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32


Found at i:1307 original size:18 final size:17

Alignment explanation


    Indices: 1279--1321  Score: 50
    Period size: 18  Copynumber: 2.4  Consensus size: 17

       1269 AAAAAGAAGG

                               
       1279 AAATAAAAATAAATAAATA
          1 AAAT-AAAATAAAT-AATA

                      *      
       1298 AAATAAAATATATAATA
          1 AAATAAAATAAATAATA

                   
       1315 ATAATAA
          1 A-AATAA

       1322 TAACAAGTCA


Statistics
Matches: 22,  Mismatches: 1, Indels: 3
        0.85            0.04        0.12

Matches are distributed among these distances:
  17    5  0.23
  18   13  0.59
  19    4  0.18

ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26


Consensus pattern (17 bp):   
AAATAAAATAAATAATA

Found at i:2111 original size:3 final size:3

Alignment explanation


    Indices: 2105--2157  Score: 88
    Period size: 3  Copynumber: 17.7  Consensus size: 3

       2095 TATAGTATAT

                                     *                                     
       2105 ATA ATA ATA ATA ATA ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA
          1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA

            *     
       2153 GTA AT
          1 ATA AT

       2158 GAGAAATTTG


Statistics
Matches: 46,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   3   46  1.00

ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32


Consensus pattern (3 bp):   
ATA

Done.