Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024722.1 Corchorus olitorius cultivar O-4 contig24755, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5104
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31


Found at i:1061 original size:15 final size:15

Alignment explanation


    Indices: 1041--1074  Score: 59
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       1031 TGATATTGTA

                    *      
       1041 GAAGTAATGATTCAG
          1 GAAGTAATAATTCAG

                           
       1056 GAAGTAATAATTCAG
          1 GAAGTAATAATTCAG

                
       1071 GAAG
          1 GAAG

       1075 AAAGTAAAAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.44, C:0.06, G:0.26, T:0.24


Consensus pattern (15 bp):   
GAAGTAATAATTCAG
Done.