Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024732.1 Corchorus olitorius cultivar O-4 contig24765, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94067

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7355--7534
93
1.9
93
91
0
297
50
2
12
34
1.53
11549--12710
332
3.5
330
82
3
1399
33
14
16
35
1.89
25253--25298
22
2.1
22
100
0
92
39
19
17
23
1.92
30743--30776
7
4.9
7
100
0
68
29
0
0
70
0.87
34234--34264
10
3.0
10
90
9
53
87
0
0
12
0.55
39177--39259
37
2.2
37
100
0
166
27
27
8
36
1.86
41789--41842
21
2.4
23
76
17
60
18
7
0
74
1.05
42451--42832
178
2.1
177
85
2
507
33
13
15
36
1.88
46211--46237
6
4.5
6
100
0
54
66
0
18
14
1.25
46591--46716
43
2.9
42
79
11
139
38
4
4
52
1.44
48404--48449
20
2.3
20
88
7
67
39
10
0
50
1.38
49352--49438
31
2.8
31
79
6
86
35
5
18
40
1.75
49948--50041
22
4.3
23
75
10
72
37
12
12
37
1.82
50006--50078
37
2.0
37
88
0
110
39
12
12
35
1.80
50046--50151
22
4.8
22
76
0
104
39
9
19
31
1.84
50324--50384
20
2.8
22
80
12
63
31
11
14
42
1.81
50284--50528
22
11.4
22
73
6
162
32
11
15
40
1.84
52129--52153
2
12.5
2
100
0
50
48
0
0
52
1.00
52965--53006
2
21.0
2
100
0
84
50
0
0
50
1.00
59029--59060
16
2.0
16
93
0
55
25
6
3
65
1.31
59354--59405
22
2.4
22
83
0
59
32
13
9
44
1.76
59527--59586
22
2.7
22
79
5
68
36
11
15
36
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59553--59805
22
11.7
22
71
11
121
35
16
8
38
1.79
59570--59636
23
3.0
22
84
4
80
35
22
8
32
1.85
59853--59966
22
5.2
21
65
23
56
35
16
9
38
1.82
59989--60148
68
2.4
65
82
4
167
38
16
8
35
1.80
60057--60211
22
7.0
22
74
10
120
36
18
10
35
1.85
60024--60118
22
4.2
22
74
5
73
36
16
9
36
1.82
60038--60207
44
3.8
43
75
12
148
36
17
10
36
1.83
60038--60211
66
2.6
66
80
7
199
36
17
9
35
1.83
62302--62372
37
1.9
37
94
0
124
36
16
8
38
1.80
66111--66162
26
2.0
25
81
3
59
57
5
5
30
1.46
78201--78294
45
2.2
43
86
7
129
39
21
4
35
1.73

Tables:   1

The End!