Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024736.1 Corchorus olitorius cultivar O-4 contig24769, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4041
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:404 original size:18 final size:18

Alignment explanation


    Indices: 381--416  Score: 54
    Period size: 18  Copynumber: 2.0  Consensus size: 18

        371 AATTCAGTAT

                    *         
        381 GGAACTCGTTCAAATCAG
          1 GGAACTCGATCAAATCAG

                  *           
        399 GGAACTTGATCAAATCAG
          1 GGAACTCGATCAAATCAG

        417 AATCGCCAAA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.36, C:0.19, G:0.22, T:0.22


Consensus pattern (18 bp):   
GGAACTCGATCAAATCAG
Done.