Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01024741.1 Corchorus olitorius cultivar O-4 contig24774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3589
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Found at i:288 original size:154 final size:154
Alignment explanation
Indices: 8--3582 Score: 5017
Period size: 154 Copynumber: 23.3 Consensus size: 154
1 CATCGTA
* *
8 TATGGACTAACTATAATCATTTTGGTGAGAT-TAGTCCAATGTGAAGTTTTTAGCTCATTTGGAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATAT-GTCCACTGTGAAGTTTTTAGCTCATTTGGAA
* * * * * *
72 CACTTGTTATTTTGTGTCTTTCGGGGCCCATTAGTTCCGTTTCGCATCGTCTTCGATTTGACAAA
65 CACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAA
*
137 CCTCAAAGCTTTTCTTT-AAGTTGTT
130 CCTCAAAGCTTTTCTTTCCA-TTGTT
* * ** *
162 TATGGGCTAACAATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTATATTATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* *
227 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACATCGATTTGACAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
*
292 CTCAAAGCTTTTCTTTCCAGTGTT
131 CTCAAAGCTTTTCTTTCCATTGTT
316 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * * * *
381 ACTTGTTATTTTGGTCCTCTC-GGGCCCATTAGTTCCATTTTGAATCGACATCGATTTTGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
*
445 CTCAAAAC--TT-TTTCCATTGTT
131 CTCAAAGCTTTTCTTTCCATTGTT
* * *
466 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGTTCATTTGAAAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * ** * * * * *
531 AATTGTAATTTTGGGCCTTTCGGGGCCTGTTAGATCTGTTTTGAATCAATTTCGATTTGGAAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
*
596 CTCAAAG-TTTTACTTTTCATTGTT
131 CTCAAAGCTTTT-CTTTCCATTGTT
* * * *
620 TATGGACTAACTATATTCATTTTTGTGAGATATGTCCACTGTGAGGTTTTTAGCTCATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * * * *
685 ACTTGTTATTTTGGGCCTTTCGGGACTCATTAATTCCATTTTGAATCGACTTTGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
* *
750 CTCAAAACTTTTCATTCCATTGTT
131 CTCAAAGCTTTTCTTTCCATTGTT
* * *
774 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTTAAGTTTTTAACTCATTTCGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * * * *
839 ACATGTTATTTTGGTCCTTTC-GGGCCCATTAGTTCCATTTTGAATCGACATCAATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
* * *
903 CTCAAAACTTTTCTTCCCAATGTT
131 CTCAAAGCTTTTCTTTCCATTGTT
* *
927 TATGGCCTATCTATAATCATTTCGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
** *
992 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAAATCCGTTTTGAATCGACATCGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
* *
1057 CTCAAAGCTTTTCTTTCCATCGTA
131 CTCAAAGCTTTTCTTTCCATTGTT
* * *
1081 TATGGACTAACTATAATCATTTTGGTGAGAT-TAGTCTAATGTGAAGTTTTTAGCTCATTTGGAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATAT-GTCCACTGTGAAGTTTTTAGCTCATTTGGAA
* * * *
1145 CACTTGTTATTTTGTGTCTTTCGGGGCCCATTAGTTCCGTTTCGAATCGTCTTCGATTTGGCAAA
65 CACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAA
* * *
1210 CCTCAAAGCTTTTATTTACGTTGTT
130 CCTCAAAGCTTTTCTTTCCATTGTT
* * *
1235 TATGGCCTAACAATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGTTTATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* *
1300 ACTTGTTATTTTGGGTCTTTCGGGGCCCATTAATTCCGTTTTGAATCGACTTCGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
*
1365 CTCAAAGCTTTTCTTTCCATTGGT
131 CTCAAAGCTTTTCTTTCCATTGTT
* *
1389 TATGGCCTAACTATAATCATTTTGGTGTGATATATCCACTGTGAAGTTTTTAGCTCATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
*
1454 ACTTGTTATTTTGGGCCTTTCGAGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
* * *
1519 CTCAAAGCTTTTATATCCATTGGT
131 CTCAAAGCTTTTCTTTCCATTGTT
*
1543 TATGGCCTAACTATAATCATTTTGGTAAGATGA-GTCCACTGTGAAGTTTTTAGCTCATTTGGAA
1 TATGGCCTAACTATAATCATTTTGGTGAGAT-ATGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
* *
1607 CACTTGTTATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATTGACTTCGATTTGGCAAA
65 CACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAA
*
1672 CCTCAAAGCTTTTCTTTCCATCGTT
130 CCTCAAAGCTTTTCTTTCCATTGTT
* * *
1697 TATGGACTAACTATAATCATTTTGGTGAGAT-TAGTCTAATGTGAAGTTTTTAGCTCATTTGGAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATAT-GTCCACTGTGAAGTTTTTAGCTCATTTGGAA
* * *
1761 CACTTGTTATTTTGCGCCTTTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAA
65 CACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAA
* *
1826 CCTCAAAACTTTT-TTTCCCAATGTT
130 CCTCAAAGCTTTTCTTT-CCATTGTT
1851 TATGGCCTAACTATAATCATTTTGGTAAGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGA
1 TATGGCCTAACTATAATCATTTTGGT--GAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGA
* ** *
1916 ACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATT-TGTTTTGAATTAACATCGATTTGGCA
64 ACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAG-TTCCGTTTTGAATCGACTTCGATTTGGCA
*
1980 AACCTCAAAGCTTTTCTTTCCATCGTT
128 AACCTCAAAGCTTTTCTTTCCATTGTT
*
2007 TATGGACTAACTATAATCATTTTGGTGAGAT-TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATAT-GTCCACTGTGAAGTTTTTAGCTCATTTGGAA
* ** * *
2071 CACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTTCCGTTTTGAATTAACATCGATTTGGCATA
65 CACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAA
*
2136 CCTCAAAGCTTTTCTTTCCATCGTT
130 CCTCAAAGCTTTTCTTTCCATTGTT
* * *
2161 TATGGACTAACTATAATCATTTTGGTGAGAT-TAGTCAACTGTGAAGATTTTAGCTCATTTGGAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATAT-GTCCACTGTGAAGTTTTTAGCTCATTTGGAA
* * * * * *
2225 AACTTGTTATTTTGTGCCTTTCGGGGCCCATTAGTTCTGTTTCGCATCGTCTTCGATTTGGCAAA
65 CACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAA
*
2290 CCTCAAAGCTTTTCTTT-AAGTTGTT
130 CCTCAAAGCTTTTCTTTCCA-TTGTT
* * *
2315 TATGGCCTAACAATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGTTTATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * *
2380 ACTTGTTATTTTGGGCCTTTCGGGTCCCATTAATTCCGTTTTGAATCGACTTCAATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
2445 CTCAAAGCTTTTCTTTCCATTGTT
131 CTCAAAGCTTTTCTTTCCATTGTT
* ** **
2469 TATGGTCTAACTATAATCATTTTGGTTTGATATGTCCACTACGAAGTTTTTAGCTCATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* *
2534 AC---------T---CCTTTC-GGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
* * * *
2586 TTCAAAACTTTT-TTCCCAATGTT
131 CTCAAAGCTTTTCTTTCCATTGTT
* *
2609 TATGGCCGAACTATAATCATTTTGGTGAGATATGT-CACTGTGAAGTTTTTAGCTTATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * * *
2673 ACTTATTATTTTCGGCCTTTCGGGGCCCTTTAGTTCCGTTTTGAATCGATTTCGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
*
2738 CTCAAATCTATTT-TTTCCATTGTT
131 CTCAAAGCT-TTTCTTTCCATTGTT
* * *
2762 TATGGCCTAACTATATTCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGTTCATTTGGAAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * * * * * *
2827 AATTGTAATTTTGGGCCTTTCGGGTCCTATTAGATCCGTTTTGAATCGATTTCGATTTGGAAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
*
2892 CTCAAAGTTTTTCTTTCCATTGTT
131 CTCAAAGCTTTTCTTTCCATTGTT
* * *
2916 TATGGACTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAGGTTTTTAGCTCATTTGTAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * *
2981 ACTTGTTATTTTGGACCTTTCGGGGCCCATTAATTCCGTTTTGAATCGATTTCGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
*
3046 CTCAAAGCTTTTCTTTCTATTGTT
131 CTCAAAGCTTTTCTTTCCATTGTT
* * *
3070 TATGGCCTAACTATAATCATTTTGGTGAGTTATGTCCACTGTTAAGTTTTTAACTCATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* ** * *
3135 ACTTATTATTTTGATCCTTTC-GGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
* *
3199 CTCAAAACTTTT-TTTCCCAATGTT
131 CTCAAAGCTTTTCTTT-CCATTGTT
*
3223 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTTATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* ** * *
3288 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATTAACATCGATTTCGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
*
3353 CTCAAAGCTTTTCTTTCCATCGTT
131 CTCAAAGCTTTTCTTTCCATTGTT
* *
3377 TATGGACAAACTATAATCATTTTGGTGAGAT-TAGTCCACTGTGAAGTTTTTAGCTCATTTGGAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATAT-GTCCACTGTGAAGTTTTTAGCTCATTTGGAA
* * * * * * *
3441 AACTTGTTATTTTGTGTCTTTCGGGGCCCATTAGTTCCGTTTCGCATCGTCTTCGATTTGACAAA
65 CACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAA
*
3506 CCTCAAAGCTTTTCTTT-AAGTTGTT
130 CCTCAAAGCTTTTCTTTCCA-TTGTT
* *
3531 TATGGGCTAACAATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTA
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTA
3583 TATTATT
Statistics
Matches: 3047, Mismatches: 327, Indels: 94
0.88 0.09 0.03
Matches are distributed among these distances:
139 28 0.01
140 40 0.01
141 48 0.02
142 6 0.00
145 1 0.00
148 1 0.00
150 89 0.03
151 47 0.02
152 51 0.02
153 377 0.12
154 2205 0.72
155 14 0.00
156 134 0.04
157 6 0.00
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (154 bp):
TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
CTCAAAGCTTTTCTTTCCATTGTT
Found at i:1524 original size:462 final size:460
Alignment explanation
Indices: 8--3582 Score: 5081
Period size: 461 Copynumber: 7.8 Consensus size: 460
1 CATCGTA
* *
8 TATGGACTAACTATAATCATTTTGGTGAGAT-TAGTCCAATGTGAAGTTTTTAGCTCATTTGGAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATAT-GTCCACTGTGAAGTTTTTAGCTCATTTGGAA
* * * * * * *
72 CACTTGTTATTTTGTGTCTTTCGGGGCCCATTAGTTCCGTTTCGCATCGTCTTCGATTTGACAAA
65 CACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGACTTCGATTTGGCAAA
* * *
137 CCTCAAAGCTTTTCTTT-AAGTTGTTTATGGGCTAACAATAATCATTTTGGTGAGATATGTCCAC
130 CCTCAAAGCTTTTCTTTCCA-TTGTTTATGGACTAACTATAATCATTTTGGTGAGATATGTCCAC
** *
201 TGTGAAGTTTTTATATTATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGT
194 TGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGT
* * *
266 TTTGAATCGACATCGATTTGACAAACCTCAAAGCTTTTCTTTCCAGTGTTTATGGCCTAACTATA
259 TTTGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATA
331 ATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGT
324 ATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGT
* *
396 CCTCTC-GGGCCCATTAGTTCCATTTTGAATCGACATCGATTTTGCAAACCTCAAAAC--TTTTT
389 -CTTTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACTTTTTTT
458 CCATTGTT
453 CCATTGTT
* * *
466 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGTTCATTTGAAAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * ** * * * *
531 AATTGTAATTTTGGGCCTTTCGGGGCCTGTTAGATCTGTTTTGAATCAATTTCGATTTGGAAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGACTTCGATTTGGCAAAC
* * *
596 CTCAAAG-TTTTACTTTTCATTGTTTATGGACTAACTATATTCATTTTTGTGAGATATGTCCACT
131 CTCAAAGCTTTT-CTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATATGTCCACT
* * * * *
660 GTGAGGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGACTCATTAATTCCATT
195 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTT
* * *
725 TTGAATCGACTTTGATTTGGCAAACCTCAAAACTTTTCATTCCATTGTTTATGGCCTAACTATAA
260 TTGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
* * * *
790 TCATTTTGGTGAGATATGTCCACTGTTAAGTTTTTAACTCATTTCGAACACATGTTATTTTGGTC
325 TCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGT-
* *
855 CTTTC-GGGCCCATTAGTTCCATTTTGAATCGACATCAATTTGGCAAACCTCAAAACTTTTCTTC
389 CTTTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACTTTT-TTT
*
919 CCAATGTT
453 CCATTGTT
* *
927 TATGGCCTATCTATAATCATTTCGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* *
992 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAAATCCGTTTTGAATCGACATCGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGACTTCGATTTGGCAAAC
* * * *
1057 CTCAAAGCTTTTCTTTCCATCGTATATGGACTAACTATAATCATTTTGGTGAGAT-TAGTCTAAT
131 CTCAAAGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATAT-GTCCACT
* *
1121 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGTGTCTTTCGGGGCCCATTAGTTCCGTT
195 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTT
* * * * * *
1186 TCGAATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTATTTACGTTGTTTATGGCCTAACAATAA
260 TTGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
* *
1251 TCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGTTTATTTGGAACACTTGTTATTTTGGGT
325 TCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT-GGT
* * * *
1316 CTTTCGGGGCCCATTAATTCCGTTTTGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTT
389 CTTTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACTTTT-TTT
*
1381 CCATTGGT
453 CCATTGTT
* *
1389 TATGGCCTAACTATAATCATTTTGGTGTGATATATCCACTGTGAAGTTTTTAGCTCATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* *
1454 ACTTGTTATTTTGGGCCTTTCGAGGCCCATTAGTTCCGTTTTGAATCGACTTCGATTTGGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGACTTCGATTTGGCAAAC
* * * * *
1519 CTCAAAGCTTTTATATCCATTGGTTATGGCCTAACTATAATCATTTTGGTAAGATGA-GTCCACT
131 CTCAAAGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGAT-ATGTCCACT
*
1583 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTAGGCCTTTCGGGGCCCATTAGTTCCGTT
195 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTT
* * *
1648 TTGAATTGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATCGTTTATGGACTAACTATAA
260 TTGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
* *
1713 TCATTTTGGTGAGAT-TAGTCTAATGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGCG
325 TCATTTTGGTGAGATAT-GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG-G
*
1777 CCTTTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACTTTTTTT
388 TCTTTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACTTTTTTT
*
1842 CCCAATGTT
453 -CCATTGTT
1851 TATGGCCTAACTATAATCATTTTGGTAAGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGA
1 TATGGCCTAACTATAATCATTTTGGT--GAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGA
** ** *
1916 ACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATTTGTTTTGAATTAACATCGATTTGGCAA
64 ACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGACTTCGATTTGGCAA
*
1981 ACCTCAAAGCTTTTCTTTCCATCGTTTATGGACTAACTATAATCATTTTGGTGAGAT-TAGTCCA
129 ACCTCAAAGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATAT-GTCCA
*
2045 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGACCATTAGTTCCG
193 CTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCG
** * * * *
2110 TTTTGAATTAACATCGATTTGGCATACCTCAAAGCTTTTCTTTCCATCGTTTATGGACTAACTAT
258 TTTTGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTAT
* * *
2175 AATCATTTTGGTGAGAT-TAGTCAACTGTGAAGATTTTAGCTCATTTGGAAAACTTGTTATTTTG
323 AATCATTTTGGTGAGATAT-GTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTG
* ** * * * * *
2239 TGCCTTTCGGGGCCCATTAGTTCTGTTTCGCATCGTCTTCGATTTGGCAAACCTCAAAGCTTTTC
387 -GTCTTTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACTTTT-
*
2304 TTT-AAGTTGTT
450 TTTCCA-TTGTT
* * *
2315 TATGGCCTAACAATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGTTTATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* *
2380 ACTTGTTATTTTGGGCCTTTCGGGTCCCATTA-ATTCCGTTTTGAATCGACTTCAATTTGGCAAA
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGA-TCCGTTTTGAATCGACTTCGATTTGGCAAA
* **
2444 CCTCAAAGCTTTTCTTTCCATTGTTTATGGTCTAACTATAATCATTTTGGTTTGATATGTCCACT
130 CCTCAAAGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATATGTCCACT
** *
2509 ACGAAGTTTTTAGCTCATTTGGAACAC---------T---CCTTTC-GGGCCCATTAGTTCCATT
195 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTT
* * * * * *
2561 TTGAATCGACATCGATTTGGCAAACTTCAAAACTTTT-TTCCCAATGTTTATGGCCGAACTATAA
260 TTGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAA
* * *
2625 TCATTTTGGTGAGATATGT-CACTGTGAAGTTTTTAGCTTATTTGGAACACTTATTATTTTCGGC
325 TCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTT-GGT
* * ** *
2689 CTTTCGGGGCCCTTTAGTTCCGTTTTGAATCGATTTCGATTTGGCAAACCTCAAATCTATTTTTT
389 CTTTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACT-TTTTTT
2754 CCATTGTT
453 CCATTGTT
* * *
2762 TATGGCCTAACTATATTCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGTTCATTTGGAAA
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
* * * * * *
2827 AATTGTAATTTTGGGCCTTTCGGGTCCTATTAGATCCGTTTTGAATCGATTTCGATTTGGAAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGACTTCGATTTGGCAAAC
*
2892 CTCAAAGTTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATATGTCCACTG
131 CTCAAAGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATATGTCCACTG
* * * *
2957 TGAGGTTTTTAGCTCATTTGTAACACTTGTTATTTTGGACCTTTCGGGGCCCATTAATTCCGTTT
196 TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTT
* *
3022 TGAATCGATTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCTATTGTTTATGGCCTAACTATAAT
261 TGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAAT
* * * * *
3087 CATTTTGGTGAGTTATGTCCACTGTTAAGTTTTTAACTCATTTGGAACACTTATTATTTTGATCC
326 CATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGT-C
3152 TTTC-GGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACTTTTTTTCC
390 TTTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACTTTTTTT-C
*
3216 CAATGTT
454 CATTGTT
*
3223 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTTATTTGGAAC
1 TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
** * *
3288 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATTAACATCGATTTCGCAAAC
66 ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGACTTCGATTTGGCAAAC
* *
3353 CTCAAAGCTTTTCTTTCCATCGTTTATGGACAAACTATAATCATTTTGGTGAGAT-TAGTCCACT
131 CTCAAAGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATAT-GTCCACT
* * *
3417 GTGAAGTTTTTAGCTCATTTGGAAAACTTGTTATTTTGTGTCTTTCGGGGCCCATTAGTTCCGTT
195 GTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTT
* * * * * * *
3482 TCGCATCGTCTTCGATTTGACAAACCTCAAAGCTTTTCTTT-AAGTTGTTTATGGGCTAACAATA
260 TTGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCA-TTGTTTATGGCCTAACTATA
3546 ATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTA
324 ATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTA
3583 TATTATT
Statistics
Matches: 2781, Mismatches: 289, Indels: 91
0.88 0.09 0.03
Matches are distributed among these distances:
447 298 0.11
448 45 0.02
449 49 0.02
450 6 0.00
453 1 0.00
456 1 0.00
457 4 0.00
458 390 0.14
459 8 0.00
460 60 0.02
461 772 0.28
462 723 0.26
463 2 0.00
464 419 0.15
465 3 0.00
ACGTcount: A:0.23, C:0.18, G:0.18, T:0.41
Consensus pattern (460 bp):
TATGGCCTAACTATAATCATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAAC
ACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGATCCGTTTTGAATCGACTTCGATTTGGCAAAC
CTCAAAGCTTTTCTTTCCATTGTTTATGGACTAACTATAATCATTTTGGTGAGATATGTCCACTG
TGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGGCCTTTCGGGGCCCATTAGTTCCGTTT
TGAATCGACTTCGATTTGGCAAACCTCAAAGCTTTTCTTTCCATTGTTTATGGCCTAACTATAAT
CATTTTGGTGAGATATGTCCACTGTGAAGTTTTTAGCTCATTTGGAACACTTGTTATTTTGGTCT
TTCGGGGCCCATTAGTTCCATTTTGAATCGACATCGATTTGGCAAACCTCAAAACTTTTTTTCCA
TTGTT
Done.