Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024743.1 Corchorus olitorius cultivar O-4 contig24776, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10568
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31


Found at i:5933 original size:19 final size:21

Alignment explanation


    Indices: 5909--5955  Score: 71
    Period size: 19  Copynumber: 2.3  Consensus size: 21

       5899 GAAATTATGG

                             *   
       5909 TTTGAAAGAAA-TTGGGTA-T
          1 TTTGAAAGAAATTTGGGCATT

                                 
       5928 TTTGAAAGAAATTTGGGCATT
          1 TTTGAAAGAAATTTGGGCATT

                   
       5949 TTTGAAA
          1 TTTGAAA

       5956 AGTTCATAAG


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  19   11  0.44
  20    6  0.24
  21    8  0.32

ACGTcount: A:0.36, C:0.02, G:0.23, T:0.38


Consensus pattern (21 bp):   
TTTGAAAGAAATTTGGGCATT

Found at i:9421 original size:19 final size:19

Alignment explanation


    Indices: 9397--9433  Score: 65
    Period size: 19  Copynumber: 1.9  Consensus size: 19

       9387 CCGTTACTTC

                               
       9397 ATTTTCTTCATTTGTGTTA
          1 ATTTTCTTCATTTGTGTTA

                         *    
       9416 ATTTTCTTCATTTTTGTT
          1 ATTTTCTTCATTTGTGTT

       9434 TTCTCCACCG


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.14, C:0.11, G:0.08, T:0.68


Consensus pattern (19 bp):   
ATTTTCTTCATTTGTGTTA
Done.