Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024744.1 Corchorus olitorius cultivar O-4 contig24777, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2616
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.38


Found at i:2502 original size:13 final size:13

Alignment explanation


    Indices: 2484--2509  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       2474 AGGGTATTTC

                         
       2484 TTAATTCTATGTT
          1 TTAATTCTATGTT

                         
       2497 TTAATTCTATGTT
          1 TTAATTCTATGTT

       2510 GCTTGTTTTG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.23, C:0.08, G:0.08, T:0.62


Consensus pattern (13 bp):   
TTAATTCTATGTT
Done.