genome.fa.s24748.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024748.1 Corchorus olitorius cultivar O-4 contig24781, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98016

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2348--2404	30	1.9	29	89	10	89	21	12	5	61	1.50
3924--3959	19	1.9	18	88	5	54	41	8	22	27	1.82
6938--7070	48	2.8	46	80	6	131	48	6	17	27	1.72
7347--7409	32	2.0	31	84	9	83	44	9	22	23	1.82
19033--19078	24	1.9	24	86	0	65	30	13	41	15	1.85
24024--24140	52	2.2	52	89	7	184	32	15	13	38	1.87
24103--24208	37	2.9	37	88	0	149	29	15	17	37	1.91
24833--24873	21	2.0	21	85	9	57	41	14	17	26	1.88
27223--27418	40	4.7	41	77	13	168	35	19	28	16	1.94
27223--27383	87	1.9	87	89	2	252	36	19	27	16	1.93
27438--27731	41	7.2	41	74	6	285	37	22	25	15	1.93
27427--27733	81	3.8	81	95	0	515	36	22	25	15	1.93
29289--29335	10	4.9	9	82	17	51	34	21	2	42	1.65
29289--29323	18	1.9	18	88	11	54	31	22	2	42	1.68
31544--31590	10	4.9	9	82	17	51	34	21	2	42	1.65
31544--31578	18	1.9	18	88	11	54	31	22	2	42	1.68
31815--31964	41	3.7	41	71	8	135	37	22	28	12	1.90
32293--32416	49	2.5	50	80	7	137	40	16	3	39	1.65
48499--48534	18	1.9	19	88	5	56	44	8	22	25	1.80
58369--58581	110	1.9	111	94	0	374	43	22	6	28	1.77
64838--64887	17	3.1	17	66	16	52	50	4	16	30	1.63
67869--67904	19	1.9	18	88	5	54	33	22	2	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71584--71624	17	2.3	18	80	16	50	21	4	7	65	1.37
71592--71625	17	2.1	17	88	5	52	17	5	11	64	1.45
77362--77439	41	1.9	41	81	5	95	50	11	12	25	1.74
79651--79828	31	5.8	30	81	2	158	32	25	24	17	1.97
83100--83176	28	2.9	26	83	7	102	19	18	25	36	1.94
91022--91127	26	3.9	27	76	8	83	38	23	14	23	1.91
91382--91637	35	7.3	35	87	3	372	29	22	18	30	1.97
91382--91637	105	2.4	105	94	0	458	29	22	18	30	1.97
92087--92235	50	3.0	50	86	0	199	36	14	14	34	1.87
92822--92895	5	14.6	5	77	19	66	16	1	16	66	1.33
92821--92896	23	3.5	21	84	12	100	15	1	15	67	1.31

Tables:   1

The End!