Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024749.1 Corchorus olitorius cultivar O-4 contig24782, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68911

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
435--540
26
3.9
26
81
8
106
37
26
14
21
1.92
466--542
29
2.8
28
84
7
95
38
24
15
20
1.92
6260--6298
2
19.5
2
100
0
78
48
0
0
51
1.00
11099--11197
49
2.0
49
88
0
144
17
28
33
21
1.95
12338--12392
20
2.9
18
82
17
76
54
0
0
45
0.99
12402--12469
30
2.2
30
80
15
77
29
23
17
29
1.97
16785--16845
31
2.0
31
100
0
122
59
13
8
19
1.59
23773--23892
44
2.7
44
86
1
150
49
16
9
25
1.75
28267--28743
250
1.9
250
93
0
828
30
12
18
37
1.88
29397--29482
43
2.0
44
88
2
129
45
16
12
25
1.83
45721--45798
37
2.1
37
88
7
113
34
10
19
35
1.85
47115--47169
20
2.8
20
94
0
92
12
54
23
9
1.66
56376--56420
5
8.8
5
92
7
65
55
0
0
44
0.99
56376--56421
2
25.5
2
79
20
57
54
0
0
45
0.99
59959--60016
29
2.0
29
100
0
116
41
13
17
27
1.87
61036--61176
31
4.5
31
83
0
156
31
26
24
17
1.97
65512--65537
11
2.4
11
100
0
52
0
26
0
73
0.84
66701--66734
14
2.4
14
95
5
59
2
0
5
91
0.51
68487--68824
52
6.6
51
90
2
439
37
14
18
29
1.91

Tables:   1

The End!