Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024750.1 Corchorus olitorius cultivar O-4 contig24783, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32840

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
998--1183
52
3.6
51
86
3
266
39
15
18
27
1.90
3811--3912
51
2.0
52
90
3
161
43
3
29
23
1.72
6644--6726
25
3.4
25
65
15
73
22
14
20
42
1.88
9667--9693
14
1.9
14
100
0
54
44
14
11
29
1.80
13585--13685
27
3.7
27
91
1
139
34
27
18
18
1.95
14075--14168
40
2.4
39
77
10
93
48
17
14
19
1.81
14264--14858
30
20.2
30
89
3
859
47
20
12
19
1.82
15115--15732
35
17.4
35
77
4
513
41
18
19
20
1.91
15115--15634
106
4.9
106
86
2
675
42
18
18
20
1.90
15113--15732
71
8.7
70
76
3
308
41
18
19
20
1.91
15115--15717
212
2.8
212
83
3
640
41
19
19
20
1.91
15144--15717
106
5.4
105
82
3
555
41
18
19
20
1.91
21414--22099
67
10.7
65
83
8
679
44
16
18
19
1.87
21525--22102
67
9.0
67
83
10
708
46
16
17
19
1.85
21738--22033
61
5.0
55
80
11
234
45
17
18
17
1.85
27292--27338
22
2.2
22
88
3
69
8
21
51
19
1.73
29797--29843
22
2.1
21
85
14
60
25
14
8
51
1.71

Tables:   1

The End!