Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024755.1 Corchorus olitorius cultivar O-4 contig24788, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51829

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10160--10188
11
2.6
11
100
0
58
10
0
0
89
0.48
17365--17390
5
5.2
5
100
0
52
0
0
23
76
0.78
19616--19643
13
2.2
13
100
0
56
17
0
17
64
1.30
23508--23556
21
2.3
21
79
6
55
16
8
8
67
1.40
27409--27508
41
2.5
41
83
4
114
24
14
14
48
1.80
34933--34997
32
2.1
32
82
2
78
38
7
16
36
1.78
37770--37978
101
2.0
102
94
1
366
33
20
7
39
1.81
45604--45656
22
2.4
22
87
6
72
32
9
9
49
1.67
45684--45725
22
1.9
22
90
0
66
30
11
2
54
1.49
45711--46134
22
19.4
22
72
9
224
35
17
9
37
1.83
46263--46416
66
2.3
65
79
2
173
37
13
10
38
1.79
46317--46415
43
2.3
44
82
1
119
36
13
11
39
1.80
46264--46683
22
18.9
22
69
13
157
35
17
9
37
1.82
46692--46823
22
5.9
22
74
11
90
38
17
7
36
1.78
46769--46853
22
3.9
22
76
11
93
36
17
11
34
1.86
50421--50473
12
4.4
13
81
11
60
45
9
5
39
1.60
50646--50687
19
2.2
19
86
0
57
59
21
7
11
1.56

Tables:   1

The End!