Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024757.1 Corchorus olitorius cultivar O-4 contig24790, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56396

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5512--5551
14
2.9
14
96
0
71
57
20
0
22
1.41
7919--7959
21
2.0
21
90
0
64
51
34
0
14
1.43
9246--9382
35
3.8
35
90
3
193
21
10
25
41
1.86
9246--9380
73
1.9
72
87
6
202
22
10
25
42
1.85
11378--11577
46
4.4
46
91
0
312
12
27
23
37
1.91
15000--15136
35
3.8
35
92
3
202
20
11
26
41
1.86
15000--15136
73
1.9
71
88
5
204
20
11
26
41
1.86
16067--16119
26
2.1
25
82
10
63
39
16
1
41
1.60
25066--25100
7
5.0
7
89
0
52
0
28
2
68
1.04
26503--26534
2
16.0
2
100
0
64
50
0
0
50
1.00
26534--26582
2
24.5
2
100
0
98
0
0
48
51
1.00
29566--29718
32
4.8
32
89
0
234
26
25
24
23
2.00
42556--42591
2
18.0
2
100
0
72
50
0
0
50
1.00
42612--42652
18
2.3
18
87
4
66
82
0
17
0
0.66
42620--42656
19
1.9
19
100
0
74
81
0
18
0
0.70
43999--44056
19
2.9
20
84
5
73
37
12
20
29
1.89
45437--45464
2
14.0
2
100
0
56
50
0
0
50
1.00
50576--50610
6
5.7
6
96
3
61
0
17
2
80
0.84
50801--50832
16
1.9
17
93
6
57
46
0
0
53
1.00
51474--51504
2
15.5
2
100
0
62
51
0
0
48
1.00
54273--54351
31
2.5
31
86
8
115
35
18
15
30
1.92
56287--56389
52
2.0
52
94
3
181
45
7
10
35
1.68

Tables:   1

The End!