Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024759.1 Corchorus olitorius cultivar O-4 contig24792, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4921
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.36


Found at i:7 original size:2 final size:2

Alignment explanation


    Indices: 1--49  Score: 84
    Period size: 2  Copynumber: 25.5  Consensus size: 2

                                                                          
          1 CT CT CT CT CT CT C- CT C- CT CT CT CT CT CT CT CT CT CT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                         
         41 CT CT CT CT C
          1 CT CT CT CT C

         50 AACAATCAAA


Statistics
Matches: 45,  Mismatches: 0, Indels: 4
        0.92            0.00        0.08

Matches are distributed among these distances:
   1    2  0.04
   2   43  0.96

ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47


Consensus pattern (2 bp):   
CT

Done.