Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024760.1 Corchorus olitorius cultivar O-4 contig24793, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93540

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
794--996
102
2.0
102
97
0
379
40
24
10
25
1.86
4603--4627
7
3.6
7
100
0
50
32
28
0
40
1.57
5211--5240
6
5.0
6
91
0
51
80
0
16
3
0.85
13120--13177
19
2.9
20
84
5
73
37
10
20
31
1.86
14414--14439
5
5.2
5
100
0
52
19
0
23
57
1.40
17651--17675
9
2.8
9
100
0
50
8
24
56
12
1.62
18993--19023
7
4.4
7
100
0
62
29
0
58
12
1.35
22811--22869
24
2.5
24
91
0
100
20
15
27
37
1.92
24811--24843
2
16.5
2
100
0
66
51
0
0
48
1.00
25485--25569
32
3.0
27
77
15
98
40
29
5
24
1.79
26009--26048
20
2.0
20
95
0
71
42
10
37
10
1.72
26445--26484
14
2.9
14
84
0
53
55
0
5
40
1.22
28901--29024
64
1.9
64
88
3
187
45
13
22
18
1.85
29720--29752
16
2.1
16
100
0
66
45
18
24
12
1.83
29846--30069
41
5.4
41
87
3
277
37
18
14
29
1.91
43829--43974
33
4.5
31
79
9
139
41
22
9
26
1.84
52533--52592
30
2.0
30
96
0
111
38
8
23
30
1.84
57405--57436
11
2.9
11
90
0
55
84
9
0
6
0.78
60948--61025
31
2.5
31
82
13
99
38
16
12
32
1.87
64105--64144
20
2.0
21
85
5
55
25
2
15
57
1.50
82305--82406
28
3.7
26
91
8
159
14
14
27
43
1.85
88766--88798
14
2.4
14
90
5
50
45
6
15
33
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91991--92062
36
2.0
36
97
0
135
26
37
5
30
1.79
91994--92070
36
2.1
36
90
4
120
28
35
6
29
1.82

Tables:   1

The End!