Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01024763.1 Corchorus olitorius cultivar O-4 contig24796, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40501

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
360--435
29
2.6
29
93
4
125
19
13
34
32
1.90
554--597
22
2.0
22
86
0
61
9
6
15
68
1.38
622--668
21
2.2
21
92
7
78
46
8
12
31
1.72
11674--11896
110
2.0
110
98
0
428
28
16
11
44
1.81
24739--24827
38
2.5
34
87
7
124
38
17
12
31
1.87
28106--28131
12
2.2
12
100
0
52
65
0
0
34
0.93
29126--29185
15
3.9
15
82
6
75
16
8
36
38
1.79
29121--29188
15
4.4
16
76
10
70
14
8
38
38
1.78
29121--29188
31
2.2
32
94
5
122
14
8
38
38
1.78
30472--30532
32
1.9
32
96
0
113
26
21
6
45
1.76
32336--32374
6
6.8
6
91
2
55
0
15
0
84
0.62
32336--32371
16
2.2
16
90
9
56
0
13
0
86
0.58
35638--35724
44
2.0
43
86
2
120
33
19
16
31
1.94
36630--36686
27
2.3
23
72
18
60
21
29
10
38
1.87
36632--36691
26
2.3
26
85
2
84
21
30
11
36
1.89
39032--39057
11
2.4
11
100
0
52
7
15
7
69
1.35
40104--40189
29
3.0
29
70
14
88
41
6
9
41
1.64
40090--40196
57
1.9
55
86
3
151
39
11
9
40
1.73

Tables:   1

The End!