Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01024766.1 Corchorus olitorius cultivar O-4 contig24799, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2385
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39


Found at i:763 original size:11 final size:11

Alignment explanation


    Indices: 720--757  Score: 51
    Period size: 11  Copynumber: 3.5  Consensus size: 11

        710 TTCCTATATA

                *      
        720 AAATAAATTAT
          1 AAATTAATTAT

                        
        731 CAAA-TAATTAT
          1 -AAATTAATTAT

                       
        742 AAATTAATTAT
          1 AAATTAATTAT

                 
        753 AAATT
          1 AAATT

        758 TGTTATGAAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  10    3  0.12
  11   18  0.75
  12    3  0.12

ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39


Consensus pattern (11 bp):   
AAATTAATTAT

Found at i:1279 original size:20 final size:20

Alignment explanation


    Indices: 1241--1281  Score: 57
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1231 TACTTTAAGT

                        *       
       1241 AAACTAAATTAACGACAAAA
          1 AAACTAAATTAAAGACAAAA

                                 
       1261 AAACTAAATTAATAG-CAAAA
          1 AAACTAAATTAA-AGACAAAA

             
       1281 A
          1 A

       1282 TAAATTTGGA


Statistics
Matches: 19,  Mismatches: 1, Indels: 2
        0.86            0.05        0.09

Matches are distributed among these distances:
  20   18  0.95
  21    1  0.05

ACGTcount: A:0.66, C:0.12, G:0.05, T:0.17


Consensus pattern (20 bp):   
AAACTAAATTAAAGACAAAA
Done.